View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21224_low_6 (Length: 410)
Name: NF21224_low_6
Description: NF21224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21224_low_6 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 19 - 410
Target Start/End: Complemental strand, 43664686 - 43664296
Alignment:
| Q |
19 |
ggtgctgtactttgggtccattaaagtagatacaaataaggcagtgaattttacataagaattgaagattttgtttttagagtttggacaaatttagttt |
118 |
Q |
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| T |
43664686 |
ggtgctgtactttgggtccattaaagtagatacaaataaggcagtgaattttacataagaattgaagattttgcttttagagtttggacaaatttagttt |
43664587 |
T |
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| Q |
119 |
ggattttacttggaaataaatatttgatagtctgttgcttttgtttgaactggaaaagacaattaacaacttgttttgaatttctgtcataataacatgt |
218 |
Q |
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| T |
43664586 |
ggattttacttggaaataaatatttgatagtctgttgcttttgtttgaactggaaaagacaattaacaacttgttttgaatttctgtcataataacatgt |
43664487 |
T |
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| Q |
219 |
tttaaattttagatgttttctgattgtgattccttgtgattatgaactgtcaattttaattatgtaattattaaattaatattggaataaaggtgcagat |
318 |
Q |
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| T |
43664486 |
tttaaattttagatgttttctgattgtgattccttgtgattatgaactgtcaattttaattatgtaattattaaattaatattggaataaaggtgcagat |
43664387 |
T |
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| Q |
319 |
gagatgatgtagttgcttatataccatattctagtttaatcctttatgataaaataagtaaaagatactatccaatgtttgaggttctattt |
410 |
Q |
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| T |
43664386 |
gagatgatgtagttgcttatataccatattctagtttaatcc-ttataataatatatgtaaaagatactatccaatgtttgaggttctattt |
43664296 |
T |
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Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 333 - 403
Target Start/End: Original strand, 51815327 - 51815396
Alignment:
| Q |
333 |
gcttatataccatattctagtttaatcctttatgataaaataagtaaaagatactatccaatgtttgaggt |
403 |
Q |
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| T |
51815327 |
gcttatataccatattttagtctaatcctt-ataataaaatatataaaagatactatccaatgtttgaggt |
51815396 |
T |
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