View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21224_low_8 (Length: 343)
Name: NF21224_low_8
Description: NF21224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21224_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 315; Significance: 1e-177; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 12 - 326
Target Start/End: Original strand, 42175683 - 42175997
Alignment:
| Q |
12 |
atgaatgaaagaactcaaaaaattcaggaactgaaacatatctataaggttcatctcttctaaaccagtattgttgttggtctttcttggatgttacttc |
111 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42175683 |
atgaatgaaagaactcaaaaaattcaggaactgaaacatatctataaggttcatctcttctaaaccagtattgttgttggtctttcttggatgttacttc |
42175782 |
T |
|
| Q |
112 |
ttgtaagaaatcagcaacacattttctctctgggcacctaaagcccgtgtattcgaagaactctagcacattttcacgcggaccttgatatacaatttga |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42175783 |
ttgtaagaaatcagcaacacattttctctctgggcacctaaagcccgtgtattcgaagaactctagcacattttcacgcggaccttgatatacaatttga |
42175882 |
T |
|
| Q |
212 |
ccttctgaaagtagaataatgtcgtcaaaaagttcaaatgtctctggtgctggctgtaaaagggaaatgactacggttacatccattatgtgaaccattt |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42175883 |
ccttctgaaagtagaataatgtcgtcaaaaagttcaaatgtctctggtgctggctgtaaaagggaaatgactacggttacatccattatgtgaaccattt |
42175982 |
T |
|
| Q |
312 |
gtctcatgaacttgc |
326 |
Q |
| |
|
||||||||||||||| |
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|
| T |
42175983 |
gtctcatgaacttgc |
42175997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 12 - 326
Target Start/End: Original strand, 42144564 - 42144878
Alignment:
| Q |
12 |
atgaatgaaagaactcaaaaaattcaggaactgaaacatatctataaggttcatctcttctaaaccagtattgttgttggtctttcttggatgttacttc |
111 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
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| T |
42144564 |
atgaatgaaagaaatcaacaaattcaggaactgaaacatatctataaggttcatctcttttaaaccagtattgttgttgatctttcttggatgttacttc |
42144663 |
T |
|
| Q |
112 |
ttgtaagaaatcagcaacacattttctctctgggcacctaaagcccgtgtattcgaagaactctagcacattttcacgcggaccttgatatacaatttga |
211 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
42144664 |
ttgtaagaaatcagcaacaccttttctctctggacacctaaagcctgtgtattcgaagaactctagcacattttcacgcggaccttgatatactatttga |
42144763 |
T |
|
| Q |
212 |
ccttctgaaagtagaataatgtcgtcaaaaagttcaaatgtctctggtgctggctgtaaaagggaaatgactacggttacatccattatgtgaaccattt |
311 |
Q |
| |
|
||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||| |||| || |||||| |||||| ||| ||||||| || |
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|
| T |
42144764 |
ccttctgaaagaagaataatgtcgtcaaagaggtcaaatgtctctggtgctggctgtaaaagcgaaacgatgacggttgcatccagtatatgaaccactt |
42144863 |
T |
|
| Q |
312 |
gtctcatgaacttgc |
326 |
Q |
| |
|
|||||| |||||||| |
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|
| T |
42144864 |
gtctcacgaacttgc |
42144878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 12 - 326
Target Start/End: Original strand, 42156511 - 42156825
Alignment:
| Q |
12 |
atgaatgaaagaactcaaaaaattcaggaactgaaacatatctataaggttcatctcttctaaaccagtattgttgttggtctttcttggatgttacttc |
111 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
42156511 |
atgaatgaaagaaatcaacaaattcaggaactgaaacatatctataaggttcatctattttaaaccagtattgttgttgatctttcttggatgttacttc |
42156610 |
T |
|
| Q |
112 |
ttgtaagaaatcagcaacacattttctctctgggcacctaaagcccgtgtattcgaagaactctagcacattttcacgcggaccttgatatacaatttga |
211 |
Q |
| |
|
||||||||||||||||| | ||||||||| || |||||||| || |||||||| ||||||||||| || || ||||| || |||||||||||||||||| |
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|
| T |
42156611 |
ttgtaagaaatcagcaatcccttttctctcaggacacctaaaacctgtgtattcaaagaactctagtacgttctcacgtggtccttgatatacaatttga |
42156710 |
T |
|
| Q |
212 |
ccttctgaaagtagaataatgtcgtcaaaaagttcaaatgtctctggtgctggctgtaaaagggaaatgactacggttacatccattatgtgaaccattt |
311 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
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|
| T |
42156711 |
ccttctgaaagtagaataatgtcgtcaaagagttcaaatgtctctggtgctggctgtaaaagagaaatgactacggttacatccattatatgaaccattt |
42156810 |
T |
|
| Q |
312 |
gtctcatgaacttgc |
326 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
42156811 |
gtctcatgaacttgc |
42156825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 7 - 325
Target Start/End: Original strand, 42135426 - 42135744
Alignment:
| Q |
7 |
gtgagatgaatgaaagaactcaaaaaattcaggaactgaaacatatctataaggttcatctcttctaaaccagtattgttgttggtctttcttggatgtt |
106 |
Q |
| |
|
|||| |||||| |||| | |||| |||||||| ||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
42135426 |
gtgaaatgaatcaaaggaatcaacaaattcagaaactgaaacatatttataaggtttatctcttctaaaccaatattgttgttggtcttttttggatgtt |
42135525 |
T |
|
| Q |
107 |
acttcttgtaagaaatcagcaacacattttctctctgggcacctaaagcccgtgtattcgaagaactctagcacattttcacgcggaccttgatatacaa |
206 |
Q |
| |
|
||||||||||| |||||||| || | |||||| || || | || || || ||| || |||| || ||||||||| || || ||||| ||||||| |
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|
| T |
42135526 |
acttcttgtaaaaaatcagctactccttttcttggaggacatttgaaaccgatggtttcaaaaaactgtaacacattttcgcgtggtccttggtatacaa |
42135625 |
T |
|
| Q |
207 |
tttgaccttctgaaagtagaataatgtcgtcaaaaagttcaaatgtctctggtgctggctgtaaaagggaaatgactacggttacatccattatgtgaac |
306 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||| |||| ||| ||||| || | |||||||| | ||||||||| |
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|
| T |
42135626 |
tttgaccttctgaaagtaggataatgtcatcaaagagttcaaatgtctctggtgctggttgtagaagagaaatcaccattgttacatctaatatgtgaac |
42135725 |
T |
|
| Q |
307 |
catttgtctcatgaacttg |
325 |
Q |
| |
|
||||||| ||||||||||| |
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|
| T |
42135726 |
catttgtttcatgaacttg |
42135744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 267
Target Start/End: Original strand, 39577320 - 39577366
Alignment:
| Q |
221 |
agtagaataatgtcgtcaaaaagttcaaatgtctctggtgctggctg |
267 |
Q |
| |
|
||||||||||||||||||||||| ||| | |||||||||| |||||| |
|
|
| T |
39577320 |
agtagaataatgtcgtcaaaaagatcataagtctctggtggtggctg |
39577366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 179 - 264
Target Start/End: Original strand, 2900557 - 2900642
Alignment:
| Q |
179 |
acattttcacgcggaccttgatatacaatttgaccttctgaaagtagaataatgtcgtcaaaaagttcaaatgtctctggtgctgg |
264 |
Q |
| |
|
|||| ||||||||| |||||||| ||||||||||| || || | ||||||||||| |||||||||||| | |||||||||||||| |
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|
| T |
2900557 |
acatgttcacgcggtccttgatagacaatttgaccatcggatataagaataatgtcatcaaaaagttcataagtctctggtgctgg |
2900642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 179 - 267
Target Start/End: Complemental strand, 2874413 - 2874325
Alignment:
| Q |
179 |
acattttcacgcggaccttgatatacaatttgaccttctgaaagtagaataatgtcgtcaaaaagttcaaatgtctctggtgctggctg |
267 |
Q |
| |
|
||||||||||| || ||||| || ||||||| ||| || || | ||||||||||| |||||||||||| | ||||||||||||||||| |
|
|
| T |
2874413 |
acattttcacgaggtccttggtaaacaatttcaccatcagataaaagaataatgtcatcaaaaagttcataagtctctggtgctggctg |
2874325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 133 - 234
Target Start/End: Original strand, 34144416 - 34144516
Alignment:
| Q |
133 |
ttttctctctgggcacctaaagcccgtgtattcgaagaactctagcacattttcacgcggaccttgatatacaatttgaccttctgaaagtagaataatg |
232 |
Q |
| |
|
||||||||| || || ||||| || ||||||| ||||||| |||||||||||| | |||||||| ||||||||||| ||||| ||||||| |||||| |
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|
| T |
34144416 |
ttttctctcgggacatctaaaacctatgtattcaaagaactgaagcacattttcatgtggaccttggaatacaatttgagcttct-aaagtaggataatg |
34144514 |
T |
|
| Q |
233 |
tc |
234 |
Q |
| |
|
|| |
|
|
| T |
34144515 |
tc |
34144516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 191 - 273
Target Start/End: Original strand, 41690493 - 41690575
Alignment:
| Q |
191 |
ggaccttgatatacaatttgaccttctgaaagtagaataatgtcgtcaaaaagttcaaatgtctctggtgctggctgtaaaag |
273 |
Q |
| |
|
|||||||| || ||||| |||||||||||||||| || ||||| |||||||| |||||||| |||||||| || |||||||| |
|
|
| T |
41690493 |
ggaccttggtagacaatctgaccttctgaaagtaagattatgtcatcaaaaagatcaaatgtttctggtgcaggttgtaaaag |
41690575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 210
Target Start/End: Original strand, 2163683 - 2163787
Alignment:
| Q |
106 |
tacttcttgtaagaaatcagcaacacattttctctctgggcacctaaagcccgtgtattcgaagaactctagcacattttcacgcggaccttgatataca |
205 |
Q |
| |
|
|||||||||||||||||||||||| | |||||| || || ||| | || ||| | | ||||| |||||||| |||||||| | || |||||||| ||| |
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|
| T |
2163683 |
tacttcttgtaagaaatcagcaactccttttctttcaggacacttgaatcccattgactcgaaaaactctagtacattttctcttggtccttgatacaca |
2163782 |
T |
|
| Q |
206 |
atttg |
210 |
Q |
| |
|
||||| |
|
|
| T |
2163783 |
atttg |
2163787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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