View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21225_high_1 (Length: 672)
Name: NF21225_high_1
Description: NF21225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21225_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 314; Significance: 1e-177; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 22 - 508
Target Start/End: Complemental strand, 23840165 - 23839660
Alignment:
| Q |
22 |
tgtccgcatcatccaaatccgtttttacacttgatgagaaagaacgcgagaagaatgtcgaagaaacaactgaggctcttcagtttcttcagaatgagct |
121 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23840165 |
tgtccgcatcatccaaatccgtttttacacttgatgagaaagagcgcgagaagaatgtcgaagaaacaactgaggctcttcagtttcttcagaatgagct |
23840066 |
T |
|
| Q |
122 |
gaagggtaagtactttggaggagaagagtttaactttgtggatattgctgctgttttggtagcattctggatccctctagttcaagacataatagggttg |
221 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |
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| T |
23840065 |
gaagggtaagtactttggaggagaagagtttaactttgtggatattgctgctgttttcgtagcat-ctggatccctctagttcaagacataatagggttg |
23839967 |
T |
|
| Q |
222 |
caattgttcactgctgaaaagtttccaaagctttacaattggagtcaagaatttcttgaccatcctgttgtgaaggaaactcttcctccacgagaacctc |
321 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||| |
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| T |
23839966 |
caattgttcacagctgaaaagtttccaaagctttacaattggagtcaagaatttcttgaccatcctgttgtgaaggaaactattcctccaagagagcctc |
23839867 |
T |
|
| Q |
322 |
ttttcgccttttttaaaggtcgttatgaaagccttcttgccgcttcaaagtagat-agtgtgct----------------gagactcggaattttaagtt |
404 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||||||||| |||||||| ||||| | ||| || |||| || |||||||| ||| |
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| T |
23839866 |
ttttcgccttttttaaaggtcgctatgagagccttcttgctgcttcaaaatagatcaatgtactgctgatatagaatatcgagagtcagaattttatgtt |
23839767 |
T |
|
| Q |
405 |
tatgtactattatctgtcattgagtttttgttgtaaggat----tttctaaataatgtttttgtaatgtgagatttctccatgtgaaatctatggatatt |
500 |
Q |
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| T |
23839766 |
tatgaattcttatctgttattgagttcttgttgttaggatttcatttctgaataat-attttataatgtgagatttctccatgtgaaatctaaggatatt |
23839668 |
T |
|
| Q |
501 |
gttgtcat |
508 |
Q |
| |
|
|||||||| |
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|
| T |
23839667 |
gttgtcat |
23839660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 36 - 548
Target Start/End: Complemental strand, 23843876 - 23843345
Alignment:
| Q |
36 |
aaatccgtttttacacttgatgagaaagaacgcgagaagaatgtcgaagaaacaactgaggctcttcagtttcttcagaatgagctgaagggtaagtact |
135 |
Q |
| |
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|||||||||||| | |||||||||||||| |||||||||||| | |||||| |||| ||||||||||| |||||| ||||||||||||||| ||||||| |
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| T |
23843876 |
aaatccgttttttcgcttgatgagaaagagcgcgagaagaatattgaagaagcaaccgaggctcttcactttcttgagaatgagctgaaggacaagtact |
23843777 |
T |
|
| Q |
136 |
ttggaggagaagagtttaactttgtggatattgctgctgttttggtagcattctggatccctctagttcaagacataatagggttgcaattgttcactgc |
235 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||| ||||||||||||||||||||| | | ||||||||||||| || |
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| T |
23843776 |
ttggaggagaagagtttaactttgtcgatattgctgctgttttcgtagcattttgggtccctctagttcaagacataaccgagctgcaattgttcacagc |
23843677 |
T |
|
| Q |
236 |
tgaaaagtttccaaagctttacaattggagtcaagaatttcttgaccatcctgttgtgaaggaaactcttcctccacgagaacctcttttcgcctttttt |
335 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
23843676 |
tgaaaagttcccaaagctttacaattggagtcaagaatttcttgaccatcctgttgtgaaggaaactcttcctcctagagagcctcttttcgcctttttt |
23843577 |
T |
|
| Q |
336 |
aaaggtcgttatgaaagccttcttgccgcttcaaagtag-----------------atagtgtgctgagactcggaattttaagtttatgtactattatc |
418 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||| ||| |||| |||| || | || ||| |||| ||||||| | ||||||| |
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| T |
23843576 |
aaaggtcgttatgagagccttcttgcggcttcaaaatagatcaatgcactgctgatatagagtgccgaaagtcagaa-tttatgtttatgaattattatc |
23843478 |
T |
|
| Q |
419 |
tgtcattgagtttttgttgtaaggat----tttctaaataatgtttttgtaatgtgagatttctccatgtgaaatctatggatattgttgtcatgtttcc |
514 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||| | |
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| T |
23843477 |
tgtcattgagtttttgttgttaggatttcatttctaaataatgtttttgtaatgtgagatttctccatgtgaaatctaagaatattgttgtcat-ttttc |
23843379 |
T |
|
| Q |
515 |
aaatttcaattaacaaagaaaagggtgtcttttt |
548 |
Q |
| |
|
| | ||||||||| || || |||||||| ||||| |
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|
| T |
23843378 |
atacttcaattaataatgagaagggtgttttttt |
23843345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 54 - 299
Target Start/End: Complemental strand, 23860992 - 23860747
Alignment:
| Q |
54 |
gatgagaaagaacgcgagaagaatgtcgaagaaacaactgaggctcttcagtttcttcagaatgagctgaagggtaagtactttggaggagaagagttta |
153 |
Q |
| |
|
|||||||| || ||| |||||||||| |||||| |||| |||||||| ||| ||||| |||||||||||||| ||||||||||| ||||||||| ||| |
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| T |
23860992 |
gatgagaaggagcgccagaagaatgttgaagaatcaaccgaggctctgcagattcttgagaatgagctgaagaacaagtactttgggggagaagagatta |
23860893 |
T |
|
| Q |
154 |
actttgtggatattgctgctgttttggtagcattctggatccctctagttcaagacataatagggttgcaattgttcactgctgaaaagtttccaaagct |
253 |
Q |
| |
|
|||||||||||||||||||||| || |||| || ||||||||| | ||||||||||| | ||| ||||||||| ||||||||||| ||||||||| |
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|
| T |
23860892 |
actttgtggatattgctgctgtgttcatagctttttggatccctttgattcaagacatagctgaattgaaattgttcaatgctgaaaagtatccaaagct |
23860793 |
T |
|
| Q |
254 |
ttacaattggagtcaagaatttcttgaccatcctgttgtgaaggaa |
299 |
Q |
| |
|
|||||| ||||| ||||||||||| ||||||||| |||||||||| |
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| T |
23860792 |
ttacaaatggagccaagaatttctcaaccatcctgctgtgaaggaa |
23860747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 54 - 298
Target Start/End: Complemental strand, 23864538 - 23864294
Alignment:
| Q |
54 |
gatgagaaagaacgcgagaagaatgtcgaagaaacaactgaggctcttcagtttcttcagaatgagctgaagggtaagtactttggaggagaagagttta |
153 |
Q |
| |
|
||||||||||| |||||||||||| | |||||| |||||| ||||| ||| |||| ||||||||||||||| |||| |||||| ||||| ||| || |
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|
| T |
23864538 |
gatgagaaagagcgcgagaagaatattgaagaatcaactggagctctgcagattctcgagaatgagctgaaggacaagttctttgggggagaggagattg |
23864439 |
T |
|
| Q |
154 |
actttgtggatattgctgctgttttggtagcattctggatccctctagttcaagacataatagggttgcaattgttcactgctgaaaagtttccaaagct |
253 |
Q |
| |
|
|||||||||||| ||||||| || |||| || ||||||||| | |||||||| ||||||||||| ||| ||||||||||||||||| ||||||||| |
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| T |
23864438 |
gttttgtggatatttctgctgtgttcatagctttttggatccctttgtttcaagacttaatagggttgaaatggttcactgctgaaaagtatccaaagct |
23864339 |
T |
|
| Q |
254 |
ttacaattggagtcaagaatttcttgaccatcctgttgtgaagga |
298 |
Q |
| |
|
|||||| ||||| ||||||||||| ||||||| |||||||||| |
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|
| T |
23864338 |
ttacaaatggagccaagaatttctcaaccatccaattgtgaagga |
23864294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 53 - 322
Target Start/End: Complemental strand, 23856951 - 23856682
Alignment:
| Q |
53 |
tgatgagaaagaacgcgagaagaatgtcgaagaaacaactgaggctcttcagtttcttcagaatgagctgaagggtaagtactttggaggagaagagttt |
152 |
Q |
| |
|
|||||||||||| |||||||||||||| |||| ||||| ||||||||| ||| ||||| |||||||| |||||| |||| ||||||||| || ||| || |
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|
| T |
23856951 |
tgatgagaaagagcgcgagaagaatgttgaaggaacaattgaggctctacagattcttgagaatgagttgaaggacaagttctttggaggtgaggagatt |
23856852 |
T |
|
| Q |
153 |
aactttgtggatattgctgctgttttggtagcattctggatccctctagttcaagacataatagggttgcaattgttcactgctgaaaagtttccaaagc |
252 |
Q |
| |
|
||||||||||||| ||||| | |||| || ||||||||| | ||||||| |||| ||||||||||||||| | ||||||||||| ||| || | |
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|
| T |
23856851 |
ggaattgtggatattgcagctgtgtacatagctttttggatccctttgattcaagaaataacagggttgcaattgttgaatgctgaaaagtgtcccaaac |
23856752 |
T |
|
| Q |
253 |
tttacaattggagtcaagaatttcttgaccatcctgttgtgaaggaaactcttcctccacgagaacctct |
322 |
Q |
| |
|
||| || ||||| ||||||||||| ||||||| |||| ||||||| | | ||||| |||||||||| |
|
|
| T |
23856751 |
tttcgaagtggagccaagaatttctcaaccatccaattgttaaggaaaatatgcctcctagagaacctct |
23856682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 36 - 173
Target Start/End: Original strand, 23853230 - 23853367
Alignment:
| Q |
36 |
aaatccgtttttacacttgatgagaaagaacgcgagaagaatgtcgaagaaacaactgaggctcttcagtttcttcagaatgagctgaagggtaagtact |
135 |
Q |
| |
|
||||| ||||||| || ||||||||||| ||||||||| | ||||||| | |||||||| ||||||||| ||||||||||||||| |||| || |
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|
| T |
23853230 |
aaatctgtttttataccggatgagaaagagcgcgagaaggctcgcgaagaattattcgaggctctgcagtttcttgagaatgagctgaaggacaagttct |
23853329 |
T |
|
| Q |
136 |
ttggaggagaagagtttaactttgtggatattgctgct |
173 |
Q |
| |
|
|||||||||| ||| ||| ||||||||||||||||||| |
|
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| T |
23853330 |
ttggaggagaggagattagctttgtggatattgctgct |
23853367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 93 - 173
Target Start/End: Original strand, 23850896 - 23850976
Alignment:
| Q |
93 |
gaggctcttcagtttcttcagaatgagctgaagggtaagtactttggaggagaagagtttaactttgtggatattgctgct |
173 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||| |||| ||||||||||||||| | ||||||||||||||||||| |
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|
| T |
23850896 |
gaggctctgcagtttcttgagaatgagctgaaggacaagttctttggaggagaagaaataggctttgtggatattgctgct |
23850976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 173
Target Start/End: Original strand, 23855810 - 23855890
Alignment:
| Q |
93 |
gaggctcttcagtttcttcagaatgagctgaagggtaagtactttggaggagaagagtttaactttgtggatattgctgct |
173 |
Q |
| |
|
|||||||| ||||||||| ||||| ||||||| | |||| |||||||||||||||| || |||||||||||||||||| |
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|
| T |
23855810 |
gaggctctgcagtttcttgagaataagctgaatgacaagttctttggaggagaagagattggttttgtggatattgctgct |
23855890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 51 - 126
Target Start/End: Complemental strand, 23801151 - 23801076
Alignment:
| Q |
51 |
cttgatgagaaagaacgcgagaagaatgtcgaagaaacaactgaggctcttcagtttcttcagaatgagctgaagg |
126 |
Q |
| |
|
||||||||||||||||| ||||||| | | || ||||||| ||||||||||| |||||| |||||||||| |||| |
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|
| T |
23801151 |
cttgatgagaaagaacgtgagaagagtattgaggaaacaaaagaggctcttcattttcttgagaatgagctcaagg |
23801076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 51 - 121
Target Start/End: Complemental strand, 23815784 - 23815714
Alignment:
| Q |
51 |
cttgatgagaaagaacgcgagaagaatgtcgaagaaacaactgaggctcttcagtttcttcagaatgagct |
121 |
Q |
| |
|
||||||||||||||||| ||||||| | | || ||||||| ||||||||||| |||||| |||||||||| |
|
|
| T |
23815784 |
cttgatgagaaagaacgtgagaagagtattgaggaaacaaaagaggctcttcaatttcttgagaatgagct |
23815714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 121
Target Start/End: Complemental strand, 23805912 - 23805843
Alignment:
| Q |
52 |
ttgatgagaaagaacgcgagaagaatgtcgaagaaacaactgaggctcttcagtttcttcagaatgagct |
121 |
Q |
| |
|
|||||||||||||||| ||||||| | | || ||||||| |||||||||| |||||| |||||||||| |
|
|
| T |
23805912 |
ttgatgagaaagaacgtgagaagagtattgaggaaacaaaagaggctcttcgatttcttgagaatgagct |
23805843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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