View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21225_high_12 (Length: 240)
Name: NF21225_high_12
Description: NF21225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21225_high_12 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 17 - 240
Target Start/End: Original strand, 35831107 - 35831330
Alignment:
| Q |
17 |
aattacggtgacactgtgattttgtagaagctctaaagtgtannnnnnnccgaaataaattgtggtggcccgccgtgatttcctcattctcaccgtcaat |
116 |
Q |
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| T |
35831107 |
aattacggtgacactgtgattttgtagaagctctaaagtgtatttttttccgaaataaattgtggtggcccgccgtgatttcctcattctcaccgtcaat |
35831206 |
T |
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| Q |
117 |
ccaaatatgcactcaatctcatattcaggtttacagcattagttctgtgaacaacttaacannnnnnnactcatttaaatgcaggatgttgatcacctac |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
35831207 |
ccaaatatgcactcaatctcatattcaggtttacagcattagttctgtgaacaacttaacatttttttactcatttaaatgcaggatgttgatcacctac |
35831306 |
T |
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| Q |
217 |
tgtcacaattgagttatattccac |
240 |
Q |
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|||||||||||||||||||||||| |
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| T |
35831307 |
tgtcacaattgagttatattccac |
35831330 |
T |
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