View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21225_high_13 (Length: 237)
Name: NF21225_high_13
Description: NF21225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21225_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 55365163 - 55365383
Alignment:
| Q |
1 |
agctggaattgggaaggagaatttccgttattatctgtagtgtcgcgtgtaaggtctagtgtcacagtaggaaatggtgctgatgctgagagtgtggcca |
100 |
Q |
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| T |
55365163 |
agctggaattgggaaggagaatttccgttattatctgtagtgtcgcgtgtaaggtctagtgtcacagtaggaaatggtgctgatgctgagagtgtggcca |
55365262 |
T |
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| Q |
101 |
tgctagaagagcaattaggaagaattctggctagtaaattggggttcatcaccccatcagcacttgacattgacccagatagtaacacggtagcagcagc |
200 |
Q |
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| T |
55365263 |
tgctagaagagcaattaggaagaattctggctagtaaattggggttcatcaccccatcagcacttgacattgacccagatagtaacacggtagcagcagc |
55365362 |
T |
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| Q |
201 |
tgcggtggtcgatgccattgg |
221 |
Q |
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| T |
55365363 |
tgcggtggtcgatgccattgg |
55365383 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 104
Target Start/End: Original strand, 8496783 - 8496832
Alignment:
| Q |
55 |
tctagtgtcacagtaggaaatggtgctgatgctgagagtgtggccatgct |
104 |
Q |
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| T |
8496783 |
tctaatgtaacagtaggaaatggtgctgaagctgaaagtgtagccatgct |
8496832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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