View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21225_high_14 (Length: 234)

Name: NF21225_high_14
Description: NF21225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21225_high_14
NF21225_high_14
[»] chr3 (7 HSPs)
chr3 (4-220)||(44786680-44786897)
chr3 (139-220)||(44803849-44803930)
chr3 (139-220)||(44788358-44788439)
chr3 (123-220)||(44783727-44783823)
chr3 (123-220)||(44800000-44800097)
chr3 (145-220)||(44792046-44792121)
chr3 (139-220)||(44796941-44797022)


Alignment Details
Target: chr3 (Bit Score: 154; Significance: 8e-82; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 4 - 220
Target Start/End: Complemental strand, 44786897 - 44786680
Alignment:
Q  4 ttaattactatcaaaactcgaatgaaatatgagaatgttnnnnnnntttacttcattttaccaacacgaagtaactaatcataattgatataacaacatt 103  Q
    |||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44786897 ttaattactatcaaaactcgaatgaaatatgagaatgttaaatttttttacttcattttaccaacacgaagtaactaatcataattgatataacaacatt 44786798  T
Q  104 annnnnnnnn-aaattcacaatggcttatgtgatgataggaggagattgagatcgatggtagagttctacgagtaggaaagactatagctgttataagcg 202  Q
    |          |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  44786797 attatttttttaaattcacaatggcttatgtgatgataggaggagattgagatcgatggcagagtcctacgagtaggaaagactatagctgttataagcg 44786698  T
Q  203 tggagttaaggaagaaaa 220  Q
    ||||||||||||||||||    
T  44786697 tggagttaaggaagaaaa 44786680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 139 - 220
Target Start/End: Complemental strand, 44803930 - 44803849
Alignment:
Q  139 taggaggagattgagatcgatggtagagttctacgagtaggaaagactatagctgttataagcgtggagttaaggaagaaaa 220  Q
    ||||||||||||||||| |||| ||| |||||||||||||||||| |  |||||||| ||||||||||||| ||||||||||    
T  44803930 taggaggagattgagattgatgctagggttctacgagtaggaaaggccgtagctgttgtaagcgtggagttgaggaagaaaa 44803849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 139 - 220
Target Start/End: Complemental strand, 44788439 - 44788358
Alignment:
Q  139 taggaggagattgagatcgatggtagagttctacgagtaggaaagactatagctgttataagcgtggagttaaggaagaaaa 220  Q
    |||||||||||||||||||||| || ||||||||||| ||| |||  ||| |||||| ||||||||||||| ||||||||||    
T  44788439 taggaggagattgagatcgatgctaaagttctacgagcagggaagggtatggctgttgtaagcgtggagttcaggaagaaaa 44788358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 123 - 220
Target Start/End: Complemental strand, 44783823 - 44783727
Alignment:
Q  123 atggcttatgtgatgataggaggagattgagatcgatggtagagttctacgagtaggaaagactatagctgttataagcgtggagttaaggaagaaaa 220  Q
    |||||||||||  |||||||| ||||||||||| || |  || ||||||||||||||||||  |||||||||| ||||| ||||||| ||||||||||    
T  44783823 atggcttatgtt-tgataggaagagattgagatagaagcaagggttctacgagtaggaaaggttatagctgttgtaagcatggagtttaggaagaaaa 44783727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 123 - 220
Target Start/End: Complemental strand, 44800097 - 44800000
Alignment:
Q  123 atggcttatgtgatgataggaggagattgagatcgatggtagagttctacgagtaggaaagactatagctgttataagcgtggagttaaggaagaaaa 220  Q
    ||||||||||  ||| ||||||||||||||||| |||   |  |||||||||||||||||  ||||||||||| ||||||| ||||| ||||||||||    
T  44800097 atggcttatgcaatggtaggaggagattgagattgataacaaggttctacgagtaggaaatgctatagctgttgtaagcgtagagttcaggaagaaaa 44800000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 145 - 220
Target Start/End: Complemental strand, 44792121 - 44792046
Alignment:
Q  145 gagattgagatcgatggtagagttctacgagtaggaaagactatagctgttataagcgtggagttaaggaagaaaa 220  Q
    ||||||||||| |||| ||||||| ||||| |||||||| || |||||||| ||||||||||||| | ||||||||    
T  44792121 gagattgagattgatgctagagttttacgaataggaaaggctgtagctgttgtaagcgtggagttcaagaagaaaa 44792046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 220
Target Start/End: Complemental strand, 44797022 - 44796941
Alignment:
Q  139 taggaggagattgagatcgatggtagagttctacgagtaggaaagactatagctgttataagcgtggagttaaggaagaaaa 220  Q
    ||||||||||||||||| |||   || |||||| || |||||||| || |||||||| ||||||||||||| ||||||||||    
T  44797022 taggaggagattgagattgataccagggttctaagactaggaaaggctgtagctgttctaagcgtggagttgaggaagaaaa 44796941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University