View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21225_high_4 (Length: 390)
Name: NF21225_high_4
Description: NF21225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21225_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 48597142 - 48596807
Alignment:
| Q |
1 |
tttagttccatagaaaaattgttaaaaaatcaacaataatatttgtgcatatgatattctcatttatttatttaacaccttattttatctatatcaatct |
100 |
Q |
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| T |
48597142 |
tttagttccatagaaaaattgttaaaaaatcaacaataatatttatgcatatgatattcttatttatttatttaacaccttattttatctatatctatct |
48597043 |
T |
|
| Q |
101 |
tcatacctcatcaccaatttatcaaatccgtatcatactactcttctagatctctttttctcatggtgtatgcccaaaaagtgtttgcctaactttttat |
200 |
Q |
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| T |
48597042 |
tcatacctcatcaccaatttatcaaattcgtatcataccactcttctagatctctttttctcatggtgtatgcccaaaaggtgtttgcctaactttttat |
48596943 |
T |
|
| Q |
201 |
attaagtaacagaattaaaccatagtacaa-tgaatcgtattattactatatattgttataattatatcgaaagattggccaaagcgtaagaacatctgt |
299 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
48596942 |
attaagtaacagaattaaaccatagtacaactgaatcgtattattactatatattgttataattatatcgaaagaatggccaaagcgtaagaacatctgt |
48596843 |
T |
|
| Q |
300 |
aacgtagaattattattaccacaattgtattgttca |
335 |
Q |
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||| |||||||||||||||||||||||||||||||| |
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| T |
48596842 |
aacatagaattattattaccacaattgtattgttca |
48596807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 251 - 375
Target Start/End: Complemental strand, 48591479 - 48591355
Alignment:
| Q |
251 |
tattgttataattatatcgaaagattggccaaagcgtaagaacatctgtaacgtagaattattattaccacaattgtattgttcatttatactacaacaa |
350 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48591479 |
tattgttataattatatcgaaagattggccaatgcgtaagaacatctgtaacatagaattattattaccacaattgtattgttcatttatactacaacaa |
48591380 |
T |
|
| Q |
351 |
caaccacactgaaatttatcatatc |
375 |
Q |
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|||||||||||||||| |||||||| |
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| T |
48591379 |
caaccacactgaaattaatcatatc |
48591355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 251 - 375
Target Start/End: Complemental strand, 48601174 - 48601050
Alignment:
| Q |
251 |
tattgttataattatatcgaaagattggccaaagcgtaagaacatctgtaacgtagaattattattaccacaattgtattgttcatttatactacaacaa |
350 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48601174 |
tattgttataattatatcgaaagattggccaatgcgtaagaacatctgtaacatagaattattattaccacaattgtattgttcatttatactacaacaa |
48601075 |
T |
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| Q |
351 |
caaccacactgaaatttatcatatc |
375 |
Q |
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|||||||||||||||| |||||||| |
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| T |
48601074 |
caaccacactgaaattaatcatatc |
48601050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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