View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21225_high_6 (Length: 375)
Name: NF21225_high_6
Description: NF21225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21225_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 4 - 356
Target Start/End: Original strand, 30498811 - 30499163
Alignment:
| Q |
4 |
agatggaatggaaagctatgttatttaccaacaagccaagcatttggattgagtattgcaacattgttttgtttgtcttttgcgcatatcattggaaatt |
103 |
Q |
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| T |
30498811 |
agatggaatggaaagctatgttatttaccaacaagccaagcatttggattgagtattgcaacattgttttgtttgtcttttgcacatatcattggaaatt |
30498910 |
T |
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| Q |
104 |
atgtgttactaaggaattcttattcaagatggaaaaatatctccaagtttaagatgcctactactgcaaaggttctgtttttgatatcttggtatgtaat |
203 |
Q |
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| T |
30498911 |
atgtgttactaaggaattcttattcaagatggaaaaatatctccaagtttaagatgcctaccactgcaaaggttctgtttttgatatcttggtatgtaat |
30499010 |
T |
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| Q |
204 |
gttatatcaatcttttgcaaattttgttgctagttgttactttaaaatgtgaattattagactnnnnnnngactaaattgttggtaatgtttatcaggct |
303 |
Q |
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| T |
30499011 |
gttatatcaatcttttgcaaattttgttgctagttgttactttaaaatgtgaattattagactaaaaaaagactaaattgttggtaatgtttatcaggct |
30499110 |
T |
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| Q |
304 |
tagctttggagttgtagttatattgttgattgctgcaacaagcatgagcagaa |
356 |
Q |
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| T |
30499111 |
tagctttggagttgtagttatattgttgattgctgcaacaagcatgagcagaa |
30499163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 4 - 140
Target Start/End: Complemental strand, 10446421 - 10446285
Alignment:
| Q |
4 |
agatggaatggaaagctatgttatttaccaacaagccaagcatttggattgagtattgcaacattgttttgtttgtcttttgcgcatatcattggaaatt |
103 |
Q |
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| T |
10446421 |
agatggaatggaaaactatgttatttgccatcaagccaagcatatggattgggtattgcagctttggtttgtttgtttttggctcaaattattggtaatt |
10446322 |
T |
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| Q |
104 |
atgtgttactaaggaattcttattcaagatggaaaaa |
140 |
Q |
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| T |
10446321 |
ctatgttgttcaagaattcttgttcaagaaggaaaaa |
10446285 |
T |
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