View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21225_high_7 (Length: 374)
Name: NF21225_high_7
Description: NF21225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21225_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 18 - 360
Target Start/End: Complemental strand, 55365133 - 55364791
Alignment:
| Q |
18 |
aattaccacaagtgattgcacaagcactttataaccaatccaaattctccggccttcaaatgtctcaagatgttggaggctcttcccagttgcatccaac |
117 |
Q |
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| T |
55365133 |
aattaccacaggtgattgcacaagcactttataaccaatccaaattctccggccttcaaatgtctcaagatgttggaggctcttcccagttgcatccaac |
55365034 |
T |
|
| Q |
118 |
tcaacaggcatcatcactaagtgctgccatcaccgcggatccaaacttcacggcagcactcgcagctgctatctcctccataattggtgctgctcctccc |
217 |
Q |
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| T |
55365033 |
tcaacaggcatcatcactaagtgccgccatcaccgcggatccaaacttcacggcagcactcgcagctgctatctcctccataattggtgctgctcctccc |
55364934 |
T |
|
| Q |
218 |
agcaacaataacagtaatcccaatatcatcaacagtgctacctacaatcagtagcatatttttcaggaagctagaagctcttcggttctataagtctgtt |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
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| T |
55364933 |
agcaacaataacagtaatcccaatatcatcaacagtgctacctacaatcagtagcatatttttcaggaagctaaaagctcttgggttctataagtctgtt |
55364834 |
T |
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| Q |
318 |
tggcaagagagcttatggcctatgagtctatttgcgttttgtt |
360 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55364833 |
tggcaagagagcttatggcctatgagtctatttgcgttttgtt |
55364791 |
T |
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