View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21225_low_12 (Length: 301)
Name: NF21225_low_12
Description: NF21225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21225_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 21 - 285
Target Start/End: Original strand, 40510117 - 40510381
Alignment:
| Q |
21 |
tgattcatgattgtttgatatggagtgagattaggattaaatactcttatttggatcccaatcttctcatctgccttgtccatatatgctttatagaacc |
120 |
Q |
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| T |
40510117 |
tgattcatgattgtttgatatggagtgagattaggattaaatactcttatttggatcccaatcttctcatctgccttgtccatatatgctttatagaacc |
40510216 |
T |
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| Q |
121 |
ttttgattggtccccatacatcatttgaaggttgaaataggtagcgtcccaaatgatgaaaaaccctgtctttgtttgggaacattttgctaagctcttg |
220 |
Q |
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| T |
40510217 |
ttttgattggtccccatacatcatttgaaggttgaaataggtagcgtcccaaatgatgaaaaaccgtgtctttgtttgggaacattttgttaagctcttg |
40510316 |
T |
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| Q |
221 |
gttgaaagatggagccataaaaagagaaggtacaaaatattgatctgatcttaaaatcaagaggg |
285 |
Q |
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| T |
40510317 |
gttgaaggatggagccataaaaagagaaggtacaaaatattgatctgatcttaaaatcaagaggg |
40510381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 141 - 265
Target Start/End: Complemental strand, 42288249 - 42288125
Alignment:
| Q |
141 |
tcatttgaaggttgaaataggtagcgtcccaaatgatgaaaaaccctgtctttgtttgggaacattttgctaagctcttggttgaaagatggagccataa |
240 |
Q |
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| T |
42288249 |
tcattggaagggtgaaaaaggtaacgtcccaaatggtgaaaaacagtgtctttctcgggaaacaatttgcttagttcttggctaaatgaaggaattataa |
42288150 |
T |
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| Q |
241 |
aaagagaaggtacaaaatattgatc |
265 |
Q |
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| T |
42288149 |
aaagagaagggacaaaatattgatc |
42288125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 269
Target Start/End: Complemental strand, 1011393 - 1011364
Alignment:
| Q |
240 |
aaaagagaaggtacaaaatattgatctgat |
269 |
Q |
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| T |
1011393 |
aaaagagaaggtacaaaatattgatctgat |
1011364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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