View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21225_low_13 (Length: 276)
Name: NF21225_low_13
Description: NF21225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21225_low_13 |
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| [»] scaffold0094 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 20 - 261
Target Start/End: Original strand, 31242408 - 31242649
Alignment:
| Q |
20 |
ataactactataatttatctcaaagaaattacatacaaacatcagcagcaacatttcaaaacatgatattatgagcatcatgcaacaaacttattaatca |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31242408 |
ataactactataatttatctcaaagaaattacatacaaacatcagcagcaacatttcaaaacatgatattatgagcatcatgcaacaaacttattaatca |
31242507 |
T |
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| Q |
120 |
accatacttattaatgtaagcagagatagaacattcatttaaatcctcctacgtacctgcaatgtctcaggttttgaatacagagaaaggaaatctggat |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
31242508 |
accatacttattaatgtaagcagagatagaacattcatttaaatcctcctacgtacctgcaatgtctcaggttgtgaatacagagaaaggaaatctggat |
31242607 |
T |
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| Q |
220 |
tttgaatctcttctctgagaaaacttaaatcagcctcaccat |
261 |
Q |
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| T |
31242608 |
tttgaatctcttctctgagaaaacttaaatcagcctcaccat |
31242649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 29 - 117
Target Start/End: Complemental strand, 17216102 - 17216014
Alignment:
| Q |
29 |
ataatttatctcaaagaaattacatacaaacatcagcagcaacatttcaaaacatgatattatgagcatcatgcaacaaacttattaat |
117 |
Q |
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| T |
17216102 |
ataatttatctcaaagaaattaaatacaaacatcagcagcaacatttaaaaacctgatattttgagcatcatgccacatacttattaat |
17216014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 142 - 268
Target Start/End: Original strand, 17214528 - 17214650
Alignment:
| Q |
142 |
gagatagaacattcatttaaatcctcctacgtacctgcaatgtctcaggttttgaatacagagaaaggaaatctggattttgaatctcttctctgagaaa |
241 |
Q |
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||||||||||||||||||||||| | | |||||||||||||||||||| |||| ||| | ||||||| ||||||||||||||||||||||||| || |
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| T |
17214528 |
gagatagaacattcatttaaatcattc----tacctgcaatgtctcaggttgtgaagacaaacaaaggaatcctggattttgaatctcttctctgagtaa |
17214623 |
T |
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| Q |
242 |
acttaaatcagcctcaccatattcttc |
268 |
Q |
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|||||||||| ||| |||| |||||| |
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| T |
17214624 |
acttaaatcatccttgccattttcttc |
17214650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 29 - 117
Target Start/End: Original strand, 17214399 - 17214487
Alignment:
| Q |
29 |
ataatttatctcaaagaaattacatacaaacatcagcagcaacatttcaaaacatgatattatgagcatcatgcaacaaacttattaat |
117 |
Q |
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||||||||||| |||||||||||||||||||||| | |||||||||| ||||| | |||||||||||||||||| ||| |||||||||| |
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| T |
17214399 |
ataatttatcttaaagaaattacatacaaacatctgaagcaacatttaaaaaccttatattatgagcatcatgccacatacttattaat |
17214487 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 142 - 268
Target Start/End: Complemental strand, 17215973 - 17215851
Alignment:
| Q |
142 |
gagatagaacattcatttaaatcctcctacgtacctgcaatgtctcaggttttgaatacagagaaaggaaatctggattttgaatctcttctctgagaaa |
241 |
Q |
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|||||||||||||||||||| |||| |||| | | ||||||||||||| |||| | | | ||||||| || ||||||||||||||||||||||||| |
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| T |
17215973 |
gagatagaacattcatttaagtccttctacat----gtaatgtctcaggttgtgaagataaataaaggaatcctagattttgaatctcttctctgagaaa |
17215878 |
T |
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| Q |
242 |
acttaaatcagcctcaccatattcttc |
268 |
Q |
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|||||||||||||| |||| |||||| |
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| T |
17215877 |
acttaaatcagccttgccattttcttc |
17215851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0094 (Bit Score: 61; Significance: 3e-26; HSPs: 4)
Name: scaffold0094
Description:
Target: scaffold0094; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 29 - 117
Target Start/End: Complemental strand, 10782 - 10694
Alignment:
| Q |
29 |
ataatttatctcaaagaaattacatacaaacatcagcagcaacatttcaaaacatgatattatgagcatcatgcaacaaacttattaat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||| ||||| | ||||| |||||||||||| ||| |||||||||| |
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| T |
10782 |
ataatttatctcaaagaaattacatacaaacatcagcaacaacatttaaaaacctaatattctgagcatcatgccacatacttattaat |
10694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0094; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 143 - 268
Target Start/End: Complemental strand, 10652 - 10531
Alignment:
| Q |
143 |
agatagaacattcatttaaatcctcctacgtacctgcaatgtctcaggttttgaatacagagaaaggaaatctggattttgaatctcttctctgagaaaa |
242 |
Q |
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|||||||||||||||||||||||| |||| |||||| ||| ||||| |||| ||| | ||||||| ||| |||||||||||||||||| |||||| |
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| T |
10652 |
agatagaacattcatttaaatcctt----gtacttgcaatatctaaggttgtgaagacaaacaaaggaatcctgaattttgaatctcttctctaagaaaa |
10557 |
T |
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| Q |
243 |
cttaaatcagcctcaccatattcttc |
268 |
Q |
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||||||||||||| |||| |||||| |
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| T |
10556 |
cttaaatcagccttgccattttcttc |
10531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0094; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 142 - 268
Target Start/End: Original strand, 9227 - 9349
Alignment:
| Q |
142 |
gagatagaacattcatttaaatcctcctacgtacctgcaatgtctcaggttttgaatacagagaaaggaaatctggattttgaatctcttctctgagaaa |
241 |
Q |
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||||||||||||| |||||||| || ||||||||||||||| ||| | |||| | | | ||||||| || ||||||||||||||||||||||||| |
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| T |
9227 |
gagatagaacattaatttaaatactt----gtacctgcaatgtcttaggctgtgaaaagaaacaaaggaatcctagattttgaatctcttctctgagaaa |
9322 |
T |
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| Q |
242 |
acttaaatcagcctcaccatattcttc |
268 |
Q |
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|||||||||||||| |||| |||||| |
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| T |
9323 |
acttaaatcagccttgccattttcttc |
9349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0094; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 29 - 117
Target Start/End: Original strand, 9098 - 9186
Alignment:
| Q |
29 |
ataatttatctcaaagaaattacatacaaacatcagcagcaacatttcaaaacatgatattatgagcatcatgcaacaaacttattaat |
117 |
Q |
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||||||||| |||||||||| |||||||||||| | | |||||||| ||||| ||||||| |||||||||||| ||| |||||||||| |
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| T |
9098 |
ataatttatatcaaagaaataacatacaaacatgatgaacaacatttaaaaacctgatattgtgagcatcatgccacatacttattaat |
9186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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