View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21225_low_17 (Length: 236)
Name: NF21225_low_17
Description: NF21225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21225_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 47193196 - 47193415
Alignment:
| Q |
1 |
caaagacaccttctttcagcaacaggatttcaaagattttcgtattcagaactcaaaaccgcgacaagagggtttagcaaagagatcggtcgaggaggag |
100 |
Q |
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| T |
47193196 |
caaagacaccttctttcagcaacaggatttcaaagattttcgtattcagagctcaaaaccgcgacaagagggtttagcaaagagatcggtcgaggaggag |
47193295 |
T |
|
| Q |
101 |
gagggattgtttacaaaggtacactcgatgatgatcgtgttgctgctgttaaatgcttaaatgaagctcatcagggagaagctgaatttctagctgaaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47193296 |
gagggattgtttacaaaggtacactcgatgatgatcgtgttgctgctgttaaatgcttaaatgaagctcatcagggagaagctgaatttctagctgaaat |
47193395 |
T |
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| Q |
201 |
aagcacaattggtatgttga |
220 |
Q |
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|||||||||||||||||||| |
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| T |
47193396 |
aagcacaattggtatgttga |
47193415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 111 - 220
Target Start/End: Original strand, 9792406 - 9792515
Alignment:
| Q |
111 |
ttacaaaggtacactcgatgatgatcgtgttgctgctgttaaatgcttaaatgaagctcatcagggagaagctgaatttctagctgaaataagcacaatt |
210 |
Q |
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|||||||| ||||||| | ||| |||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||| ||||||| |||||| |
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| T |
9792406 |
ttacaaagttacactcaacgattatcgtgttgctgctgttaaatgcttaaatgaagctcatcaagaagaagctaaatttctagcttaaataagtacaatt |
9792505 |
T |
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| Q |
211 |
ggtatgttga |
220 |
Q |
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|||||||||| |
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| T |
9792506 |
ggtatgttga |
9792515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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