View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21225_low_3 (Length: 428)
Name: NF21225_low_3
Description: NF21225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21225_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 19 - 413
Target Start/End: Original strand, 47626344 - 47626738
Alignment:
| Q |
19 |
aggagggagaaatattccaaccaatgtggttgcaatcattgttgttttggttgtcattttggccgtgattttgtccaccggctgttgtttattattgata |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
47626344 |
aggagggagaaatattccaaccaatgtggttgcaatcattgttgttttggttgtcattttggccgtgattttgtccaccggctgctgtttattattgata |
47626443 |
T |
|
| Q |
119 |
aaagcgaagaagagacgcagggccagtcacagagaaaactgtaatgtcaataaacccatcatctataatattctagcttaatcaatgcctgtgttttagt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47626444 |
aaagcgaagaagagacgcagggccagtcacagagaaaactgtaatgtcaataaacccatcatctataatattctagcttaatcaatgcctgtgttttagt |
47626543 |
T |
|
| Q |
219 |
atatactatatagttttggctatgaatattaattttaaaaggctattctgtgaactgtgatgcagttgtgcttgaatttaaaaactcagagtcattggaa |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47626544 |
atatactatatagttttggctatgaatattaattttaaaaggctattctgtgaactgtgatgcagttgtgcttgaatttaaaaactcagagtcattggaa |
47626643 |
T |
|
| Q |
319 |
tttgattttgctacaattgaaatagcaacaaacatgttttctgaagatagcaaaataggcagagggggatatggacaagtctacaagataataat |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
47626644 |
tttgattttgctacaattgaaatagcaacaaacatgttttctgaagatagcaaaataggcagagggggatatggacaagtctacaaggtaataat |
47626738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 75 - 378
Target Start/End: Complemental strand, 29413234 - 29412932
Alignment:
| Q |
75 |
ttttggccgtgattttgtccaccggctgttgtttattattgataaaagcgaagaagagacgcagggccagtcacagagaaaactgtaatgtcaataaacc |
174 |
Q |
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|||| |||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
29413234 |
ttttcgccgtgcttttgtccaccagctgctgtttattattgataaaagcgaagaagagacgcagggccagtcacagagaaaaccgtaatgtcaataaacc |
29413135 |
T |
|
| Q |
175 |
catcatctataatattctagcttaatcaatgcctgtgttttagtatatactatatagttttggctatgaatattaattttaaaaggctattctgtgaact |
274 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
29413134 |
catcatctataatatt-tagcttaatcaatgcctgtgttttagtatataatatatagttttggctatgaatattaatttgaaaaggctattctgtgaacg |
29413036 |
T |
|
| Q |
275 |
gtgatgcagttgtgcttgaatttaaaaactcagagtcattggaatttgattttgctacaattgaaatagcaacaaacatgttttctgaagatagcaaaat |
374 |
Q |
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| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
29413035 |
gcgatgtagttttgcttgaatttaaaaactcagagtcattggaatttgattttgctacaattgaaatagcaacaaacatgttttctgaagaaagcaaaat |
29412936 |
T |
|
| Q |
375 |
aggc |
378 |
Q |
| |
|
|||| |
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|
| T |
29412935 |
aggc |
29412932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 175 - 405
Target Start/End: Original strand, 546118 - 546347
Alignment:
| Q |
175 |
catcatctataatattctagcttaatcaatgcctgtgttttagtatatactatatagttttggctatgaatattaattttaaaaggctattctgtgaact |
274 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
546118 |
catcatctataatattttagcttaatcaatgcct-tgttttagtatataatatatagttttggctatgaatattaattttaaaaggctattctgtgaact |
546216 |
T |
|
| Q |
275 |
gtgatgcagttgtgcttgaatttaaaaactcagagtcattggaatttgattttgctacaattgaaatagcaacaaacatgttttctgaagatagcaaaat |
374 |
Q |
| |
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|||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
546217 |
gtgatgaagttgtgcttgaatttaaaaacacagagtcattgtaatttgattttgctacaattgaaatagcaacaaacatgttttatgaagatagcaaaat |
546316 |
T |
|
| Q |
375 |
aggcagagggggatatggacaagtctacaag |
405 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
546317 |
aggcagagggggatatggacaagtctacaag |
546347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 61 - 137
Target Start/End: Original strand, 546000 - 546076
Alignment:
| Q |
61 |
tgttttggttgtcattttggccgtgattttgtccaccggctgttgtttattattgataaaagcgaagaagagacgca |
137 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||| |
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| T |
546000 |
tgttttggttgtcattttggccgtgattttgtccaccgactgctgtttactattgataaaagcgaagaagagacgca |
546076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 175 - 405
Target Start/End: Original strand, 23347026 - 23347257
Alignment:
| Q |
175 |
catcatctataatattctagcttaatcaatgcctgtgttttagtatatactatatagttttggctatgaatattaattttaaaaggctattctgtgaact |
274 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23347026 |
catcatctataatattttagcttaatcaatgcct-tgttttagtatataatatatagttttggctatgaatattaattttaaaaggctattctgtgaact |
23347124 |
T |
|
| Q |
275 |
gtgatgcagttgtgcttgaatttaaaaactcagagtcattggaatttgattttgctacaattgaaatagcaacaaacatgttttctgaagatagcaaaat |
374 |
Q |
| |
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|||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23347125 |
gtgatgaagttgtgcttgaatttaaaaacacagagtcattgtaatttgattttgctacaattgaaatagcaacaaacatgttttctgaagatagcaaaat |
23347224 |
T |
|
| Q |
375 |
aggcagaggggg--atatggacaagtctacaag |
405 |
Q |
| |
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|||||||||||| ||||||||||||||||||| |
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| T |
23347225 |
aggcagagggggatatatggacaagtctacaag |
23347257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 61 - 137
Target Start/End: Original strand, 23346908 - 23346984
Alignment:
| Q |
61 |
tgttttggttgtcattttggccgtgattttgtccaccggctgttgtttattattgataaaagcgaagaagagacgca |
137 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
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| T |
23346908 |
tgttttggttgtcattttggccgtgattttgtccaccgactgctgtttattattgataaaagcgaagaagagacgca |
23346984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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