View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21225_low_4 (Length: 419)
Name: NF21225_low_4
Description: NF21225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21225_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 364; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 26 - 405
Target Start/End: Complemental strand, 44787364 - 44786985
Alignment:
| Q |
26 |
caacacaatggcaaaaacagaagaaaggatcacggatttagaatcagtgaagaggtacttggagaagaaaggagaagaattagcaccaacggtagacaat |
125 |
Q |
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| T |
44787364 |
caacacaatggcaaaaacagaagaaaggatcacggatttagaatcagtgaagaggtacttggagaagaaaggagaagaatcagcaccaacggtagacaat |
44787265 |
T |
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| Q |
126 |
gaattgcctcaggagtttttgggacatctagtcgtacgtggcttacgccttgatctcattgagcctggccgtatcgttttctcaatgaagatacctccca |
225 |
Q |
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| T |
44787264 |
gaattgcctcaggagtttttgggacatctagtcgtacgtggcttacgccttgatctcattgagcctggccgtatcgttttctcaatgaagatacctccca |
44787165 |
T |
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| Q |
226 |
atttacttgttcgtatcttactcttttcatctttttatctttccctaataaataacattaatggattttgttctttttcatttatttgcagaattctagt |
325 |
Q |
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| T |
44787164 |
atttacttgttcgtatcttactcttttcatctttttatctttccataataaataacattaatggattttgttctttttcatttatttgcagaattctagt |
44787065 |
T |
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| Q |
326 |
aactgcttacacggtggtgccatcactactttggtggatctggtaggcgcgaccgcagttcccaccgcgggattttcatg |
405 |
Q |
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| T |
44787064 |
aactgcttacacggtggtgccatcactactttggtggatctggtaggcgcaactgcagttcccaccgcgggattttcatg |
44786985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 116 - 256
Target Start/End: Complemental strand, 44793091 - 44792951
Alignment:
| Q |
116 |
ggtagacaatgaattgcctcaggagtttttgggacatctagtcgtacgtggcttacgccttgatctcattgagcctggccgtatcgttttctcaatgaag |
215 |
Q |
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| T |
44793091 |
ggtagacgatgaattgcctcaggagtttctggaacatctaaccttgcgcggcctacgattggatcgcattgaacctggtcgtgtcgtcttctcaatgaac |
44792992 |
T |
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| Q |
216 |
atacctcccaatttacttgttcgtatcttactcttttcatc |
256 |
Q |
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| T |
44792991 |
atacctccacgtttactcgttcgtatcctacactattcatc |
44792951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 177 - 240
Target Start/End: Complemental strand, 44801313 - 44801250
Alignment:
| Q |
177 |
gatctcattgagcctggccgtatcgttttctcaatgaagatacctcccaatttacttgttcgta |
240 |
Q |
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| T |
44801313 |
gatctcattgagcctggccatgtcgttttctcaatgaacatacctccacgtttactcgttcgta |
44801250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 335 - 400
Target Start/End: Complemental strand, 44789315 - 44789250
Alignment:
| Q |
335 |
cacggtggtgccatcactactttggtggatctggtaggcgcgaccgcagttcccaccgcgggattt |
400 |
Q |
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| T |
44789315 |
cacggtggtgccatcactactttggtggatgtgataggcgcagctgcaattcccgccgctggattt |
44789250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 102
Target Start/End: Complemental strand, 44805922 - 44805880
Alignment:
| Q |
60 |
gatttagaatcagtgaagaggtacttggagaagaaaggagaag |
102 |
Q |
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| T |
44805922 |
gatttggaatcagcgaagaggtacttggaggagaaaggagaag |
44805880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 220
Target Start/End: Complemental strand, 44805843 - 44805762
Alignment:
| Q |
139 |
agtttttgggacatctagtcgtacgtggcttacgccttgatctcattgagcctggccgtatcgttttctcaatgaagatacc |
220 |
Q |
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| T |
44805843 |
agtttctggaacatctaatcttgcgtggcctacgcttcgatgtcattgagcctggccgtgtcattttcacaatgaacatacc |
44805762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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