View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21225_low_8 (Length: 382)
Name: NF21225_low_8
Description: NF21225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21225_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 23 - 366
Target Start/End: Original strand, 32508587 - 32508927
Alignment:
| Q |
23 |
aaacattgaaaaatggtgctgaataattaagcatgtcatcatggactcattggttacatagaagggaatctagtcctagattaagatcatgataaattgg |
122 |
Q |
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| T |
32508587 |
aaacattgaaaaatggtgctgaaaaattaagcatgtcatcatggactcattggttacatagaagggaatctagtcatagattaagatcatgataaattgg |
32508686 |
T |
|
| Q |
123 |
aacttcaacttccagtgcctatgtaaattgtcaaattttatgctacatttatgaacctttttctttcctacagctggataa-nnnnnnnnnnnagactta |
221 |
Q |
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| T |
32508687 |
aacttcaacttccagtgcctatgtaaattgtcaaattttatgctacctttatgaacctttttctttcctacagctggataatttattttttttagactta |
32508786 |
T |
|
| Q |
222 |
ggctctgcgcannnnnnngtttgataattaaatgttataatcaaaagaagaaaattaatagtgtagaaaatcttacaacagtgaagacattattggaaca |
321 |
Q |
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| T |
32508787 |
ggctctgcacatttttttgtttgataattaaatgttataatcaaaagaagaa----aatagtgtagaaaatcttacaacagtgaagacattattggaaca |
32508882 |
T |
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| Q |
322 |
gatcatttgaagaagatgattgatgagaatcctaacaatcctttg |
366 |
Q |
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| T |
32508883 |
gatcatttgaagaagatgattgatgagaatccttacaatcctttg |
32508927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 87 - 194
Target Start/End: Original strand, 32513242 - 32513349
Alignment:
| Q |
87 |
ggaatctagtcctagattaagatcatgataaattggaacttcaacttccagtgcctatgtaaattgtcaaattttatgctacatttatgaacctttttct |
186 |
Q |
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|||| |||||||||||||||||||||| || ||||||||| |||||||||||||||||||| || ||| |||||| ||||| ||||||||||||||||| |
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| T |
32513242 |
ggaacctagtcctagattaagatcatgttacattggaactaaaacttccagtgcctatgtaagttatcagattttacgctacctttatgaacctttttct |
32513341 |
T |
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| Q |
187 |
ttcctaca |
194 |
Q |
| |
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|||||||| |
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| T |
32513342 |
ttcctaca |
32513349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 85 - 194
Target Start/End: Original strand, 21904001 - 21904110
Alignment:
| Q |
85 |
agggaatctagtcctagattaagatcatgataaattggaacttcaacttccagtgcctatgtaaattgtcaaattttatgctacatttatgaaccttttt |
184 |
Q |
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|||||| ||||||||||||||||||||||||| || ||||| |||||| |||||||||||||||| ||| |||||||||||| |||||||||| |||| |
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| T |
21904001 |
agggaacctagtcctagattaagatcatgatacatctgaactaaaacttcgagtgcctatgtaaattatcagattttatgctacctttatgaaccatttt |
21904100 |
T |
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| Q |
185 |
ctttcctaca |
194 |
Q |
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| T |
21904101 |
ctttcctaca |
21904110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 299 - 366
Target Start/End: Original strand, 32492806 - 32492873
Alignment:
| Q |
299 |
acagtgaagacattattggaacagatcatttgaagaagatgattgatgagaatcctaacaatcctttg |
366 |
Q |
| |
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|||||||||||| || || ||||| ||||||||||||||||| ||||||||||||||||||||||| |
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| T |
32492806 |
acagtgaagacagtaatgatgcagattatttgaagaagatgattaatgagaatcctaacaatcctttg |
32492873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 32513148 - 32513194
Alignment:
| Q |
20 |
agtaaacattgaaaaatggtgctgaataattaagcatgtcatcatgg |
66 |
Q |
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| T |
32513148 |
agtaaacattgaaaaatggtgctgaagtattaagcacgtcgtcatgg |
32513194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 81
Target Start/End: Original strand, 21903922 - 21903961
Alignment:
| Q |
41 |
ctgaataattaagcatgtcatcatggactcattggttacat |
81 |
Q |
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| T |
21903922 |
ctgaataattatgcatgtcatcatggactca-tggttacat |
21903961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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