View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21226_high_10 (Length: 317)
Name: NF21226_high_10
Description: NF21226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21226_high_10 |
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Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 17 - 304
Target Start/End: Original strand, 34180577 - 34180868
Alignment:
| Q |
17 |
aaatattccgttcctagtaaattactttagtgaaaacgatattctttnnnnnnnn----cgatattctatgcagcaactacaaacaacttgttgttcgaa |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
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| T |
34180577 |
aaatattccgttcctagtaaattactttagtgaaaacgatattctttgttgaaaaaaaacgatattctatgcagcaactacaaacaacttcttgttcgaa |
34180676 |
T |
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| Q |
113 |
aggaaaaaagaaaacaaattcaatccgtagaccataataagaagtatannnnnnnngttaaaataataaagatcatatgttataactgatggtttcataa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34180677 |
aggaaaaaagaaaacaaattcaatccgtagaccataataagaagtatattttttttgttaaaataataaagatcatatgttataactgatggtttcataa |
34180776 |
T |
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| Q |
213 |
cccaaatgattcctatatgatatttcaaacattatttgtctaactatcatcaaactaaaattaattagtttaacgattttattccatgagaa |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34180777 |
cccaaatgattcctatatgatatttcaaacattatttgtctaactatcatcaaactaaaattaattagtttaacgattttattccatgagaa |
34180868 |
T |
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