View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21226_high_17 (Length: 228)
Name: NF21226_high_17
Description: NF21226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21226_high_17 |
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Alignment Details
Target: chr8 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 25456637 - 25456521
Alignment:
| Q |
1 |
aagtcgtataacctgcctatatata----aggaaaaaacgatgacctgtcaagaaagaaaactcatcaattacatatttactaaaatgccccttaaagcc |
96 |
Q |
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| T |
25456637 |
aagtcgtataacctgcctatatatatataaggaaaaaacgatgacttgtcaagaaagaaaactcatcaattacatatttactaaaaggccccttaaagcc |
25456538 |
T |
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| Q |
97 |
atcaggaagggcaaaat |
113 |
Q |
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| T |
25456537 |
atcaggaagggcaaaat |
25456521 |
T |
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Target: chr1 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 28 - 113
Target Start/End: Original strand, 1966143 - 1966228
Alignment:
| Q |
28 |
gaaaaaacgatgacctgtcaagaaagaaaactcatcaattacatatttactaaaatgccccttaaagccatcaggaagggcaaaat |
113 |
Q |
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| T |
1966143 |
gaaaaaacgatgacctgtcaagaaagaaaactcatcaattacatatttactaaaatgccccttaaagccaccaggaagggcaaaat |
1966228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 180 - 218
Target Start/End: Original strand, 21169166 - 21169204
Alignment:
| Q |
180 |
tgatttcactacaatacaaaagcattcatggatagactc |
218 |
Q |
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| T |
21169166 |
tgatttcaccacaatacaaaagcattcatggatagactc |
21169204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 214
Target Start/End: Original strand, 21286651 - 21286689
Alignment:
| Q |
176 |
caattgatttcactacaatacaaaagcattcatggatag |
214 |
Q |
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| T |
21286651 |
caattgatttcactacaatacaaaatcattcatagatag |
21286689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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