View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21226_high_19 (Length: 215)
Name: NF21226_high_19
Description: NF21226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21226_high_19 |
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Alignment Details
Target: chr2 (Bit Score: 66; Significance: 2e-29; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 16267622 - 16267687
Alignment:
| Q |
14 |
tctaggatggattgtaacacacattgtatagagaacggtgcaatctcatcatcatgttactactac |
79 |
Q |
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| T |
16267622 |
tctaggatggattgtaacacacattgtatagagaacggtgcaatctcatcatcatgttactactac |
16267687 |
T |
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Target: chr2; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 16267610 - 16267549
Alignment:
| Q |
81 |
cacaattcttgagcatcttgctccagctagtattgattgcactgtgctcccacaaattaggg |
142 |
Q |
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| T |
16267610 |
cacaattcttgagcatcttcctccagctagtattgattgcactgtgctcccacaaattaggg |
16267549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 140
Target Start/End: Complemental strand, 16264783 - 16264719
Alignment:
| Q |
76 |
ctacccacaattcttgagcatcttgctccagctagtattgattgcactgtgctcccacaaattag |
140 |
Q |
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| T |
16264783 |
ctaccaacaattcttgggcatgtagcttctactagtattgattgcactatactcccacaaattag |
16264719 |
T |
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