View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21226_low_12 (Length: 303)
Name: NF21226_low_12
Description: NF21226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21226_low_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 11 - 298
Target Start/End: Complemental strand, 11859900 - 11859607
Alignment:
| Q |
11 |
caaaggaacaatgtcttcgaaacaagcttgaccaaattgttgttctggattgataagaaacccttcagcagtccagagttgaatcaatctctctgcatca |
110 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
11859900 |
caaaggaacaaagtctttgaaacaagcttgaccaaattgttgttctggattgataagaaacccttcagccgtccagagttgaatcaatctctctgcatca |
11859801 |
T |
|
| Q |
111 |
atcaaataatcttctggaaacaatgaacaatatgcaaagcataacttctgataagtgggaagattgtcgtaatagataaacttaagcatttccaatgctt |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
11859800 |
atcaaataatcttctggaaacaatgaacaatatgcgaagcataacttctgataagtgggaaggttgtcgtaatagataaacttaagcgtttctaatgctt |
11859701 |
T |
|
| Q |
211 |
ctggaatccagttgtca------ccactatcaccactttgcttgtacatcaccgtcgctacgaacacaatcaaaagaggaattccagcacaacc |
298 |
Q |
| |
|
||||||||||||||| |||| | ||||||||||||| | ||| ||| ||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
11859700 |
tcggaatccagttgtcaccacgaccaccaccaccactttgcttcttcattaccatcgctacgatcacaatcaaaagaggaactccagcacaacc |
11859607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 11 - 280
Target Start/End: Complemental strand, 11827765 - 11827496
Alignment:
| Q |
11 |
caaaggaacaatgtcttcgaaacaagcttgaccaaattgttgttctggattgataagaaacccttcagcagtccagagttgaatcaatctctctgcatca |
110 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
11827765 |
caaaggaacaaagtcttcgaaacaagcatgaccaaattgttgttctggattgataagaaacccttcaccagtccagagttgaatcaatctctctgcatca |
11827666 |
T |
|
| Q |
111 |
atcaaataatcttctggaaacaatgaacaatatgcaaagcataacttctgataagtgggaagattgtcgtaatagataaacttaagcatttccaatgctt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||| | | |||| | ||||| |
|
|
| T |
11827665 |
atcaaataatcttctggaaacaatgaacaatatgcaaagcataatttctgataagtgggaagatcgtcgtaatagataagcttcaccttttctagtgctt |
11827566 |
T |
|
| Q |
211 |
ctggaatccagttgtcaccactatcaccactttgcttgtacatcaccgtcgctacgaacacaatcaaaag |
280 |
Q |
| |
|
| ||||||| | ||||||| | ||||||| ||||| ||||||| | || |||| ||| |||||||| |
|
|
| T |
11827565 |
cccgaatccattcttcaccaccaacaccactatgcttcgtcatcacctttgcaacgatcactatcaaaag |
11827496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 66 - 188
Target Start/End: Complemental strand, 12038604 - 12038482
Alignment:
| Q |
66 |
agaaacccttcagcagtccagagttgaatcaatctctctgcatcaatcaaataatcttctggaaacaatgaacaatatgcaaagcataacttctgataag |
165 |
Q |
| |
|
||||| |||||||| ||||| |||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| | |
|
|
| T |
12038604 |
agaaatccttcagccgtccaaagttgaattaatctctcggcatcaattaaataatcttctggaaacaatgaacaatatgcaaagcacaacttctgatacg |
12038505 |
T |
|
| Q |
166 |
tgggaagattgtcgtaatagata |
188 |
Q |
| |
|
||||||||| |||||||||||| |
|
|
| T |
12038504 |
tgggaagatcttcgtaatagata |
12038482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 15 - 157
Target Start/End: Original strand, 11902628 - 11902770
Alignment:
| Q |
15 |
ggaacaatgtcttcgaaacaagcttgaccaaattgttgttctggattgataagaaacccttcagcagtccagagttgaatcaatctctctgcatcaatca |
114 |
Q |
| |
|
||||||| ||| | |||||||| | ||| ||||||||||| |||| || | ||||| ||||||||||||||||||| ||| |||||||| |||||||||| |
|
|
| T |
11902628 |
ggaacaaagtcattgaaacaaggtcgacaaaattgttgttgtggaatggtgagaaatccttcagcagtccagagttcaattaatctctcagcatcaatca |
11902727 |
T |
|
| Q |
115 |
aataatcttctggaaacaatgaacaatatgcaaagcataactt |
157 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
11902728 |
aataatctcttggaaacaatgaacaatatgcaaaacataactt |
11902770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 72 - 193
Target Start/End: Complemental strand, 11731508 - 11731387
Alignment:
| Q |
72 |
ccttcagcagtccagagttgaatcaatctctctgcatcaatcaaataatcttctggaaacaatgaacaatatgcaaagcataacttctgataagtgggaa |
171 |
Q |
| |
|
||||||||| ||| |||||||| |||||||| ||||||||||||| || ||||||||||||||||||| |||||||||| || || | | | ||||||| |
|
|
| T |
11731508 |
ccttcagcaaaccaaagttgaattaatctctcggcatcaatcaaatgatgttctggaaacaatgaacaaaatgcaaagcacaatttataacatgtgggaa |
11731409 |
T |
|
| Q |
172 |
gattgtcgtaatagataaactt |
193 |
Q |
| |
|
||| |||||||| ||||||| |
|
|
| T |
11731408 |
gatcctcgtaatatctaaactt |
11731387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 62
Target Start/End: Complemental strand, 12038674 - 12038623
Alignment:
| Q |
11 |
caaaggaacaatgtcttcgaaacaagcttgaccaaattgttgttctggattg |
62 |
Q |
| |
|
||||||||||| ||| | |||||||||| ||||||||||||||||||||||| |
|
|
| T |
12038674 |
caaaggaacaaagtcgttgaaacaagctcgaccaaattgttgttctggattg |
12038623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 161
Target Start/End: Original strand, 11974974 - 11975068
Alignment:
| Q |
67 |
gaaacccttcagcagtccagagttgaatcaatctctctgcatcaatcaaataatcttctggaaacaatgaacaatatgcaaagcataacttctga |
161 |
Q |
| |
|
|||| ||||| || ||| |||| ||||| |||||||| |||||||||||| ||||| ||||||||||||||| || |||| || ||||||||| |
|
|
| T |
11974974 |
gaaatccttctgctgtcaagagatgaattaatctctcgacatcaatcaaatgatcttgaggaaacaatgaacaaaattcaaaacaaaacttctga |
11975068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University