View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21226_low_13 (Length: 302)

Name: NF21226_low_13
Description: NF21226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21226_low_13
NF21226_low_13
[»] chr6 (3 HSPs)
chr6 (26-146)||(23593477-23593597)
chr6 (244-286)||(23593644-23593686)
chr6 (180-217)||(23593617-23593654)
[»] chr1 (4 HSPs)
chr1 (18-146)||(51050888-51051016)
chr1 (180-217)||(51050832-51050869)
chr1 (60-102)||(3788942-3788984)
chr1 (232-286)||(37689689-37689742)
[»] chr4 (3 HSPs)
chr4 (57-146)||(28123779-28123868)
chr4 (232-286)||(28123942-28123996)
chr4 (180-217)||(28123888-28123925)
[»] chr8 (1 HSPs)
chr8 (60-102)||(1487956-1487998)
[»] chr5 (1 HSPs)
chr5 (232-286)||(30003324-30003377)
[»] chr3 (1 HSPs)
chr3 (60-102)||(50306022-50306064)
[»] chr2 (1 HSPs)
chr2 (60-102)||(26021410-26021452)


Alignment Details
Target: chr6 (Bit Score: 113; Significance: 3e-57; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 26 - 146
Target Start/End: Original strand, 23593477 - 23593597
Alignment:
Q  26 cagtagcttagtctcggaatagaaaagctagattattattgagttgaaataggtgaagttacaagcataaggaattttccatacccatgtcaatgggtct 125  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  23593477 cagtagctaagtctcggaatagaaaagctagattattattgagttgaaataggtgaagttacaagcataaggaattttcgatacccatgtcaatgggtct 23593576  T
Q  126 tgaatcttacaagcataagtt 146  Q
    |||||||||||||||||||||    
T  23593577 tgaatcttacaagcataagtt 23593597  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 244 - 286
Target Start/End: Original strand, 23593644 - 23593686
Alignment:
Q  244 atgaagattgttttttattaattggttccattaaaagcctgtt 286  Q
    |||||||||| ||||||||||||||||||||||||||||||||    
T  23593644 atgaagattgatttttattaattggttccattaaaagcctgtt 23593686  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 217
Target Start/End: Original strand, 23593617 - 23593654
Alignment:
Q  180 tggatttaggttcctttgattgaagctatgaagattga 217  Q
    ||||||||||||||||||||||||||||||||||||||    
T  23593617 tggatttaggttcctttgattgaagctatgaagattga 23593654  T

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Target: chr1 (Bit Score: 105; Significance: 2e-52; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 18 - 146
Target Start/End: Complemental strand, 51051016 - 51050888
Alignment:
Q  18 agaatcaccagtagcttagtctcggaatagaaaagctagattattattgagttgaaataggtgaagttacaagcataaggaattttccatacccatgtca 117  Q
    |||||||| ||||||| ||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  51051016 agaatcactagtagctaagtatgggaatagaaaagttagattattattgagttgaaataggtgaagttacaagcataaggaattttcgatacccatgtca 51050917  T
Q  118 atgggtcttgaatcttacaagcataagtt 146  Q
    |||||||||||||||||||||||||||||    
T  51050916 atgggtcttgaatcttacaagcataagtt 51050888  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 217
Target Start/End: Complemental strand, 51050869 - 51050832
Alignment:
Q  180 tggatttaggttcctttgattgaagctatgaagattga 217  Q
    ||||||||||||||||||||||||||||||||||||||    
T  51050869 tggatttaggttcctttgattgaagctatgaagattga 51050832  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 102
Target Start/End: Complemental strand, 3788984 - 3788942
Alignment:
Q  60 attattgagttgaaataggtgaagttacaagcataaggaattt 102  Q
    ||||||| |||||||| |||||||||||||||||||| |||||    
T  3788984 attattgcgttgaaatgggtgaagttacaagcataagaaattt 3788942  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 286
Target Start/End: Original strand, 37689689 - 37689742
Alignment:
Q  232 agattgcaactcatgaagattgttttttattaattggttccattaaaagcctgtt 286  Q
    |||||||||||||||||||||| |||| | ||||||||||||| |||||| ||||    
T  37689689 agattgcaactcatgaagattgattttga-taattggttccataaaaagcatgtt 37689742  T

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Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 57 - 146
Target Start/End: Original strand, 28123779 - 28123868
Alignment:
Q  57 attattattgagttgaaataggtgaagttacaagcataaggaattttccatacccatgtcaatgggtcttgaatcttacaagcataagtt 146  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||  ||||| || ||||||||||||||||||||||||||||||||    
T  28123779 attattattgagtttaaataggtgaagttacaagcataaggaatttttgatacctatctcaatgggtcttgaatcttacaagcataagtt 28123868  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 286
Target Start/End: Original strand, 28123942 - 28123996
Alignment:
Q  232 agattgcaactcatgaagattgttttttattaattggttccattaaaagcctgtt 286  Q
    ||||| |||||||||||||||| |||||||||||||| ||||| |||||| ||||    
T  28123942 agattccaactcatgaagattgctttttattaattgggtccataaaaagcttgtt 28123996  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 217
Target Start/End: Original strand, 28123888 - 28123925
Alignment:
Q  180 tggatttaggttcctttgattgaagctatgaagattga 217  Q
    |||||||||||||||||||||||||||| |||||||||    
T  28123888 tggatttaggttcctttgattgaagctaagaagattga 28123925  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 102
Target Start/End: Original strand, 1487956 - 1487998
Alignment:
Q  60 attattgagttgaaataggtgaagttacaagcataaggaattt 102  Q
    |||||||||||||||| |||||||||||||||||||| |||||    
T  1487956 attattgagttgaaatgggtgaagttacaagcataagaaattt 1487998  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 286
Target Start/End: Original strand, 30003324 - 30003377
Alignment:
Q  232 agattgcaactcatgaagattgttttttattaattggttccattaaaagcctgtt 286  Q
    |||||||||||||||||||||| |||| | ||||||||||||| |||||| ||||    
T  30003324 agattgcaactcatgaagattgattttga-taattggttccataaaaagcatgtt 30003377  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 102
Target Start/End: Original strand, 50306022 - 50306064
Alignment:
Q  60 attattgagttgaaataggtgaagttacaagcataaggaattt 102  Q
    ||||||| |||||||| |||||||||||||||||||| |||||    
T  50306022 attattgcgttgaaatgggtgaagttacaagcataagaaattt 50306064  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 102
Target Start/End: Original strand, 26021410 - 26021452
Alignment:
Q  60 attattgagttgaaataggtgaagttacaagcataaggaattt 102  Q
    ||||||| |||||||| |||||||||||||||||||| |||||    
T  26021410 attattgcgttgaaatgggtgaagttacaagcataagaaattt 26021452  T

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