View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21226_low_17 (Length: 245)
Name: NF21226_low_17
Description: NF21226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21226_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 40190737 - 40190508
Alignment:
| Q |
1 |
catagggtataaatgttggtacctagtctagactaaaactatataacttgcgtatctattatgagttatgaatcaacagactaaaatttggtgttgtaga |
100 |
Q |
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| T |
40190737 |
catagggtataaatgttggtacctagtctagactaaaactatataacttgcgtatctattatgaattatgaatcaacagactaaaatttggtgttggaga |
40190638 |
T |
|
| Q |
101 |
ctggttttctggaaatcgattcgattcgattcaacaaatcatattatatattgaatcaaaactaacagtacagactaagtaagatttaataatcaaagta |
200 |
Q |
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| T |
40190637 |
ctggttttctggaaatcgattcgattcgattcaacaaatcatattatatattgaatcaaaactaacagtacagactaagtaagatttaataatcaaagta |
40190538 |
T |
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| Q |
201 |
aaattatgtgaaaccctcaccgatcaatag |
230 |
Q |
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||||||||||||||||||||| |||||||| |
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| T |
40190537 |
aaattatgtgaaaccctcaccaatcaatag |
40190508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 42900336 - 42900108
Alignment:
| Q |
1 |
catagggtataaatgttggtacctagtctagactaaaactatataacttgcgtatctat--------tatgagttatgaatcaacagactaaaatttggt |
92 |
Q |
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||||||||| |||| ||| | |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
42900336 |
catagggtagaaattttgttgcctagtctagactaaaactatataacttgcgtatctatattgatattatgaattatgaatcaacagactaaaatttggt |
42900237 |
T |
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| Q |
93 |
gttgtagactggttttctggaaatcgattcgattcgattcaacaaatcatattatatattgaatcaaaactaacagtacagactaagtaagatttaataa |
192 |
Q |
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| T |
42900236 |
gatggagattggttttctaaaaa-----ccgattggattcaacaaatcatattatatattgaatcaaaactgacattacaaactaagtaagatt---taa |
42900145 |
T |
|
| Q |
193 |
tcaaagtaaaattatgtgaaaccctcaccgatcaata |
229 |
Q |
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||||||||||||||||||||||||||||| ||||||| |
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| T |
42900144 |
tcaaagtaaaattatgtgaaaccctcaccaatcaata |
42900108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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