View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21226_low_18 (Length: 237)
Name: NF21226_low_18
Description: NF21226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21226_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 16114498 - 16114268
Alignment:
| Q |
1 |
gacacattcacatgcaaaatctgataagaaaatttaacactagcatggggtgatggtccatta---------ttatttgattattaattggggagataaa |
91 |
Q |
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| T |
16114498 |
gacacattcacatgcaaaatctgataagaaaatttaacactagcatggggtgatggtccattaattatatttttatttgattattaattggggagataaa |
16114399 |
T |
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| Q |
92 |
tttgggacagaaagggagcatcttcctgaaaacattctctcgttttcacactggtcattgctcacgtgacacttgccatgtgatgtgatcaagattattg |
191 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16114398 |
tttgggacagaaagggagcatcttcctgaaaacattctctcgttttcacaatggtcattgctcacgtgacacttgccatgtgatgtgatcaagattattg |
16114299 |
T |
|
| Q |
192 |
tataaaaacaaacttcatctatacatttcat |
222 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
16114298 |
tataaaaacaaacttcatctatacatttcat |
16114268 |
T |
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