View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21226_low_2 (Length: 515)
Name: NF21226_low_2
Description: NF21226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21226_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 194 - 496
Target Start/End: Original strand, 24945924 - 24946229
Alignment:
| Q |
194 |
ccatgagattcaagaactggtccttacatatttccacccaacaatggacccacatgtaacacagaatatgtcgacgacagtgtgccatcctgtgatcatc |
293 |
Q |
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| T |
24945924 |
ccatgagattcaagaactggtccttacatatttccacccaacaatggacccacatgtaacacagaatatgtcgacgacagtgtgccatcctgtgatcatc |
24946023 |
T |
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| Q |
294 |
atccgttcttctttttctccgatggtgacattcacactgtcataacattgattaaagagatgttatttgcaggactcatcttacaaaaccaagtttaaag |
393 |
Q |
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| T |
24946024 |
atccgttcttctttttctccgatggtgacattcacactgtcataacatggattgaagagatgttatttgtaggactcatcttacacaaacaagtctaaag |
24946123 |
T |
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| Q |
394 |
gtgggatagagtttctaatgccatccaatagtagcaattgcacgattggtacataaacataccgcaaacatatcagtatta--atttttgg-tagaataa |
490 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||| |||||||| |||||||| |
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| T |
24946124 |
gtgggatagagtttctaatgccatccaatagtagcaattgcatgattggtacgtaaacataccgcaaacatataagtattactatttttggatagaataa |
24946223 |
T |
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| Q |
491 |
gcatta |
496 |
Q |
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| |||| |
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| T |
24946224 |
gtatta |
24946229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 19 - 144
Target Start/End: Original strand, 24945748 - 24945874
Alignment:
| Q |
19 |
aataactcgagt-aaaaagctaaattaaaagcaaccgatttggcctaaacattgttaattaactgattacctttcaaggataaactttccttctttgtac |
117 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24945748 |
aataactcgagacaaaaagctaaattaaaagcaaccgatttggcctaaaaattgttaattaactgattacctttcaaggataaactttccttctttgtac |
24945847 |
T |
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| Q |
118 |
ttctgattcttctcagaagcagcctcc |
144 |
Q |
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| T |
24945848 |
ttctgattcttctcagaagcagcctcc |
24945874 |
T |
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