View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21226_low_8 (Length: 347)
Name: NF21226_low_8
Description: NF21226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21226_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 28 - 343
Target Start/End: Complemental strand, 40756793 - 40756476
Alignment:
| Q |
28 |
ccacataagaaagtca--gagagaatgaaaataagagtgaaaataggcggtggggatcgtacggaataactgctgcatcaacaataaggggatgacttag |
125 |
Q |
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| T |
40756793 |
ccacataagaaagtcacagagagaatgaaaataagagtgaaaataggcggaggggatcgtacggaataactgctgcatcaacaataaggggatgacttag |
40756694 |
T |
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| Q |
126 |
cagcacagattccagttctgcaggagctacctgacacaagcaatccacatatgtattaatgaaaactaaaaccgttccaaactcaatttgataccttaga |
225 |
Q |
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| T |
40756693 |
cagcacagattccagttctgcaggagctacctgacacaagcaatccacatatgtattaatgaaaactaaaaccgttccaaactcaatttgataccttaga |
40756594 |
T |
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| Q |
226 |
actaaaggaatttactgatattctaatttaacttcaagtgcaacaaaacttcaccattgaaacttaaactatttatgagtttgagtacctgatacccttt |
325 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
40756593 |
actaaaggaatttactgatattctaatttaacttcaagtgcaacaaaacttcactattgaaacttaaactatttatgaatttgagtacctgatacccttt |
40756494 |
T |
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| Q |
326 |
gtgcttgattagctcctt |
343 |
Q |
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|||||||||||||||||| |
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| T |
40756493 |
gtgcttgattagctcctt |
40756476 |
T |
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