View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21226_low_9 (Length: 338)
Name: NF21226_low_9
Description: NF21226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21226_low_9 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 40191039 - 40190702
Alignment:
| Q |
1 |
cttcaagggttcttcgttcttcaacagtgaggtattcataatactgagcaagacgtgtctgaccttgtttgttcaccattaaaacgaatcggatccccat |
100 |
Q |
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| T |
40191039 |
cttcaagggttcttcgttcttcaacggtgaggtattcgtaatactgagcaagacgtgtctgaccttgtttgttcaccattaaaacgaatcggatccccat |
40190940 |
T |
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| Q |
101 |
ttttattcctcttcctctttatctttatctttctttctgctacacacaacggaggaggatgagaagtgaaatcgtgttttcaagtgcagtatcaagatag |
200 |
Q |
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| T |
40190939 |
ttttattcctctttctctttatctttatctttctttctgctacacacaacggaggaggatgagaagtgaaatcgtgttttcaagtgcagtatcaagatag |
40190840 |
T |
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| Q |
201 |
ttgtcttggaagcatttaacctccgcattgacgaaagtcctaatgtggtcgaaccggtaaaagattttagtggatcgagccataaacaacaatcagctca |
300 |
Q |
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| T |
40190839 |
ttgtcttggaagcatttaacctccgcattgacgaaagtcctaatgtggtcgaaccggtaaaagattttagtggatcgagccataaacaacaatcagctca |
40190740 |
T |
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| Q |
301 |
gtcatagggtatagatgttggtacctagtctagactaa |
338 |
Q |
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| T |
40190739 |
gtcatagggtataaatgttggtacctagtctagactaa |
40190702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 42974691 - 42974589
Alignment:
| Q |
1 |
cttcaagggttcttcgttcttcaacagtgaggtattcataatactgagcaagacgtgtctgaccttgtttgttcaccattaaaacgaatcggatccccat |
100 |
Q |
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| T |
42974691 |
cttcaagggttcgtcgttcttcaacagtgaggtattcgtaatactgagcaagacgggtctgtccttgtttgttcaccattaacacgaatcggatccccat |
42974592 |
T |
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| Q |
101 |
ttt |
103 |
Q |
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||| |
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| T |
42974591 |
ttt |
42974589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 213 - 302
Target Start/End: Complemental strand, 42900451 - 42900363
Alignment:
| Q |
213 |
catttaacctccgcattgacgaaagtcctaatgtggtcgaaccggtaaaagattttagtggatcgagccataaacaacaatcagctcagt |
302 |
Q |
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| T |
42900451 |
catttaacctttgcattgacgaaagtcctaatatggtcgaaccggtaaacgattttggtggatcgagccataaacaacaa-cagctcagt |
42900363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 185 - 300
Target Start/End: Original strand, 19386080 - 19386195
Alignment:
| Q |
185 |
tgcagtatcaagatagttgtcttggaagcatttaacctccgcattgacgaaagtcctaatgtggtcgaaccggtaaaagattttagtggatcgagccata |
284 |
Q |
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| T |
19386080 |
tgcagtatcaagatagtcatctcgaacccatttaaccctcgcattgacgaaagtcctaatgtggtcgaaccggtgaaagagtttggtggattgagccatt |
19386179 |
T |
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| Q |
285 |
aacaacaatcagctca |
300 |
Q |
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| T |
19386180 |
aacaagaatcagctca |
19386195 |
T |
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