View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21227_high_11 (Length: 218)
Name: NF21227_high_11
Description: NF21227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21227_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 29113154 - 29112956
Alignment:
| Q |
1 |
ctaaatttgaaatgccaaatcattagttttagcattgccacattgaactggttatgcatggaataccaggaaaagaatctgtatcagcagagaagtttga |
100 |
Q |
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| T |
29113154 |
ctaaatttgaaatgccaaatcattagttttagcattgccacattgaactggttatgcatggaataccaggaaaagaatctgtatcagcggagaagtttga |
29113055 |
T |
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| Q |
101 |
caatggtatgacaaatgatttgattcttgaagtgcagtattttgtccttgatgcaatccttgagttattctgccaacgagaggaattcattgttgaaat |
199 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |
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| T |
29113054 |
caatggtatgacaaatgatttgattcttgaagtgcaatattttgtccttgatgcaatccttgagttattctgccaatgagaggaattcattgatgaaat |
29112956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 33312738 - 33312934
Alignment:
| Q |
1 |
ctaaatttgaaatgccaaatcattagttttagcattgccacattgaactggttatgcatggaataccaggaaaagaatctgtatcagcagagaagtttga |
100 |
Q |
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|||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33312738 |
ctaaatttgaaatggcaaatcattagttttagctttgccacattgaactgattatgcatggaataccaggaaaagaatctgtatcagcagagaagtttga |
33312837 |
T |
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| Q |
101 |
caatggtatgacaaatgatttgattcttgaagtgcagtattttgtccttgatgcaatccttgagttattctgccaacgagaggaattcattgttgaa |
197 |
Q |
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||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||| |
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| T |
33312838 |
caatggtatgaaaaatgatttgattcttgaagtgcaatattttgtccttgatgcaatccttgagttattctgcgaatgagaggaattcattgatgaa |
33312934 |
T |
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