View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21227_high_4 (Length: 667)
Name: NF21227_high_4
Description: NF21227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21227_high_4 |
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| [»] scaffold0057 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 497; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 114 - 651
Target Start/End: Original strand, 3351759 - 3352298
Alignment:
| Q |
114 |
gagaagtgaagtttgtggaaggaggaatatatgcaaaggtcacattgtcatacaattgtggaaggagggatatatgcaaaggcactagcataccattatt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3351759 |
gagaagtgaagtttgtggaaggaggaatatatgcaaaggtcacattgtcatacaattgtggaaggagggatatatgcaaaggcactagcataccattatt |
3351858 |
T |
|
| Q |
214 |
ttgttcttatcaaaatcgcacttctaatgtttgaggaagacatgaatttatgcttgacgatatcttaacattttgtgtata--tatcctctcttttcctt |
311 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||| |
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| T |
3351859 |
ttgttcttatcaaaatcgcacttctaatgtttgagaaagacatgaatttatggttgacgttatcttaacattttgtgtatatatatcctctcttttcctt |
3351958 |
T |
|
| Q |
312 |
tatttgctaacacaatatccttccttgcaaagaaataactcttgctcgcctagaccctagtaacttcactaaacctaagatgacaaaatctggttacata |
411 |
Q |
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||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3351959 |
tattttctcacacaatatccttccttgcaaagaaataactcttgcttgcctagaccctagtaacttcactaaacctaagatgacaaaatctggttacata |
3352058 |
T |
|
| Q |
412 |
gatgctgcatttcgttcatctaggaacaatgaagcttactttttcattaatgataagtatatcctattggattatgcaccgggaactggcaacgataaga |
511 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
3352059 |
gatgctgcatttcgttcatctaggaacaatgaagcttactttttcatgaatgataagtatatcctattggactatgcaccgggaactggcaacgataaga |
3352158 |
T |
|
| Q |
512 |
ttttgtatgggccgagtcttgttcgcgatgggtttagatcacttgctcataccatatttggaagctatggaatagattgttcctttaacaccgataacaa |
611 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3352159 |
ttttgtatgggccgagtcttgttcgcgatgggtttagatcacttgctcataccatatttggaagctatggaatagattgttcctttaacaccgataacaa |
3352258 |
T |
|
| Q |
612 |
cgaagcattcatcttttatgaaaacttttgtgctctcata |
651 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
3352259 |
cgaagcattcatcttttatgaaaacttttgtgctctcata |
3352298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 3351582 - 3351694
Alignment:
| Q |
1 |
aaaaagataagagaaatgaaaagaaagagatatggtgttcaattactagatgtcaacttttttatatttacctacaaaagatttccagcaatatatgtca |
100 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3351582 |
aaaaagataagagaaatgaaaagaaagagatatgttgttcaattactagatgtcaacttttttatatttacctacaaaagatttccagcaatatatgtca |
3351681 |
T |
|
| Q |
101 |
aatttctaaggat |
113 |
Q |
| |
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||||||||||||| |
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| T |
3351682 |
aatttctaaggat |
3351694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 388 - 647
Target Start/End: Complemental strand, 42046562 - 42046300
Alignment:
| Q |
388 |
aagatgacaaaatctggttacatagatgctgcatttcgttcatctaggaacaatgaagcttactttttcattaatgat---aagtatatcctattggatt |
484 |
Q |
| |
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|||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||| ||||||| |||||| ||||| | |||||||||| |
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| T |
42046562 |
aagatgacaaaatctggttacataagggctgcttttcgttcatctaggcacaatgaagcttacattttcatcaatgatgataagtacgtgctattggatt |
42046463 |
T |
|
| Q |
485 |
atgcaccgggaactggcaacgataagattttgtatgggccgagtcttgttcgcgatgggtttagatcacttgctcataccatatttggaagctatggaat |
584 |
Q |
| |
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|||| || ||||| |||||||||||||||| ||||||| ||||||| | |||||||||| ||||||||||| ||| |||||| |||||||| ||| |
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| T |
42046462 |
atgctcctggaaccaccaacgataagattttgcatgggccatctcttgttagtgatgggtttaaatcacttgctcctacaatatttcaaagctatgcaat |
42046363 |
T |
|
| Q |
585 |
agattgttcctttaacaccgataacaacgaagcattcatcttttatgaaaacttttgtgctct |
647 |
Q |
| |
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|||||| | ||| |||||||||||||| | |||||||||||| ||||||| ||||||||||| |
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| T |
42046362 |
tgattgtgcatttgacaccgataacaaccaggcattcatctttcatgaaaatttttgtgctct |
42046300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 114; Significance: 2e-57; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 391 - 651
Target Start/End: Complemental strand, 42471743 - 42471483
Alignment:
| Q |
391 |
atgacaaaatctggttacatagatgctgcatttcgttcatctaggaacaatgaagcttactttttcattaatgataagtatatcctattggattatgcac |
490 |
Q |
| |
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||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||||| || | |||||||||||||| | |
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| T |
42471743 |
atgacaaaacctggttacattaatgctgcatttcgttcatctaggaacaacgaagcttactttttcatgaatgataaatacgtactattggattatgctc |
42471644 |
T |
|
| Q |
491 |
cgggaactggcaacgataagattttgtatgggcc-gagtcttgttcgcgatgggtttagatcacttgctcataccatatttggaagctatggaatagatt |
589 |
Q |
| |
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||||||| ||||||| || ||||| | || || || | ||||||| |||||||| | ||||||||||||||| ||||||||||||||||||| |||| |
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| T |
42471643 |
cgggaacccccaacgatgaggttttgaacggacctgaat-ttgttcgtgatgggttccgttcacttgctcataccgtatttggaagctatggaattgatt |
42471545 |
T |
|
| Q |
590 |
gttcctttaacaccgataacaacgaagcattcatcttttatgaaaacttttgtgctctcata |
651 |
Q |
| |
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|| ||||| |||| ||||||| | | |||||||| |||||||||||| |||||||||||||| |
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| T |
42471544 |
gtgcctttgacacggataacacctaggcattcatattttatgaaaacctttgtgctctcata |
42471483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057 (Bit Score: 96; Significance: 1e-46; HSPs: 2)
Name: scaffold0057
Description:
Target: scaffold0057; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 391 - 630
Target Start/End: Complemental strand, 63746 - 63507
Alignment:
| Q |
391 |
atgacaaaatctggttacatagatgctgcatttcgttcatctaggaacaatgaagcttactttttcattaatgataagtatatcctattggattatgcac |
490 |
Q |
| |
|
||||||||||||||||||||| |||| | ||||||||||||||| || |||||||| ||||||||||| ||||||||| | |||||||||||||| | |
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| T |
63746 |
atgacaaaatctggttacataaatgcagtatttcgttcatctagaaaaaatgaagcatactttttcatcaatgataagctcttgctattggattatgctc |
63647 |
T |
|
| Q |
491 |
cgggaactggcaacgataagattttgtatgggccgagtcttgttcgcgatgggtttagatcacttgctcataccatatttggaagctatggaatagattg |
590 |
Q |
| |
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| ||||| |||||||||||||||| ||||| || | | |||||||| |||||||| ||| |||| | |||||| |||||||||| ||||||||||||| |
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| T |
63646 |
ccggaaccagcaacgataagattttatatggacctatttttgttcgccatgggtttccatcgcttgataataccaaatttggaagcaatggaatagattg |
63547 |
T |
|
| Q |
591 |
ttcctttaacaccgataacaacgaagcattcatcttttat |
630 |
Q |
| |
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| ||||| |||||||| |||| || || ||| |||||||| |
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| T |
63546 |
tgcctttgacaccgatgacaatgaggcgttcgtcttttat |
63507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057; HSP #2
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 379 - 630
Target Start/End: Complemental strand, 37702 - 37451
Alignment:
| Q |
379 |
actaaacctaagatgacaaaatctggttacatagatgctgcatttcgttcatctaggaacaatgaagcttactttttcattaatgataagtatatcctat |
478 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||| |||||| |||||||||||||||||| |||||||| ||||||||||| ||||||||| | | | |
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| T |
37702 |
actatacctaagatgacgaaatctggttacataaatgctgtatttcgttcatctaggaaaaatgaagcatactttttcatcaatgataagctcttggttt |
37603 |
T |
|
| Q |
479 |
tggattatgcaccgggaactggcaacgataagattttgtatgggccgagtcttgttcgcgatgggtttagatcacttgctcataccatatttggaagcta |
578 |
Q |
| |
|
|||||||||| || ||||| |||||||||||||||| |||| || | |||||||| | |||||| ||| |||| | |||| | |||||||||| | |
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| T |
37602 |
tggattatgctcccggaaccagcaacgataagattttacatggacctgtttttgttcgccacgggtttccatcgcttgataatacaaaatttggaagcaa |
37503 |
T |
|
| Q |
579 |
tggaatagattgttcctttaacaccgataacaacgaagcattcatcttttat |
630 |
Q |
| |
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||||||||||||| ||||| |||||||| ||||||| || ||| |||||||| |
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| T |
37502 |
tggaatagattgtgcctttgacaccgatgacaacgaggcgttcgtcttttat |
37451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 94; Significance: 2e-45; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 385 - 651
Target Start/End: Original strand, 14452307 - 14452579
Alignment:
| Q |
385 |
cctaagatgacaaaatctggttacatagatgctgcatttcgttcatctaggaacaatgaagcttactttttcattaatgataagtatatcctattggatt |
484 |
Q |
| |
|
||||||||||||||||||||||| || |||||| | |||||||||||| | ||||||||||||||||||||| ||||||||||| || ||||| | |
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| T |
14452307 |
cctaagatgacaaaatctggttatgtaaatgctgtaattcgttcatctaagtccaatgaagcttactttttcatcaatgataagtacgcgctgttggact |
14452406 |
T |
|
| Q |
485 |
atgcaccgggaactggcaac---------gataagattttgtatgggccgagtcttgttcgcgatgggtttagatcacttgctcataccatatttggaag |
575 |
Q |
| |
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||| | | ||| ||||| ||||| ||||||||||||| | |||||| || ||||| |||| ||||| ||||||||| ||||||||||| |
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| T |
14452407 |
atgga---gtaaccggcaaaagcggaggagataaacttttgtatgggcctactcttgtccgtgatggttttaaatcacatgctcatacaatatttggaag |
14452503 |
T |
|
| Q |
576 |
ctatggaatagattgttcctttaacaccgataacaacgaagcattcatcttttatgaaaacttttgtgctctcata |
651 |
Q |
| |
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||||||||| |||||| ||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
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|
| T |
14452504 |
ctatggaattgattgtgcctttgacaccgataacaacgaggcattcatcttttatgaaaatttttgtgctctcata |
14452579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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