View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21227_high_8 (Length: 279)
Name: NF21227_high_8
Description: NF21227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21227_high_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 24455672 - 24455898
Alignment:
| Q |
1 |
agcatttgaacaatttgccaatgctaacatgactaatgagagggttaagattgagaatagaaatcttagtgccattgctgatttggaataaattttagac |
100 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24455672 |
agcatttgaacaatttgctaatcctaacatgactaatgagagggttaagattgagaatagaaatcttagtgccattgctgatttggaataaattttagac |
24455771 |
T |
|
| Q |
101 |
taagaagtgttggtggagaatggcttttataaagttcatatgtcacaaacctctttaaaactttggagttttcctcataaaaacgtagcttggcagtcac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
24455772 |
taagaagtgttggtggagaatggcttttataaagttcatatgtcacaaacctctttaaaactttggagttttcctcataaaaacgtagcttggcaatcac |
24455871 |
T |
|
| Q |
201 |
tttatgtaaaatattttatcaaattct |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
24455872 |
tttatgtaaaatattttatcaaattct |
24455898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 267
Target Start/End: Original strand, 24455915 - 24455956
Alignment:
| Q |
226 |
cttactaatttatcaatcaattggcattatttctcacctatg |
267 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
24455915 |
cttactaatttaccaatcaattggcattatttctcacctatg |
24455956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University