View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21227_low_16 (Length: 210)
Name: NF21227_low_16
Description: NF21227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21227_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 169; Significance: 8e-91; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 13 - 193
Target Start/End: Original strand, 22687430 - 22687610
Alignment:
| Q |
13 |
agaagaagaaaaataagggtctttttgttttgccacttcattcaagagtaacaggagcaagatatccttatatttggataagtatagcgaaagagaatgg |
112 |
Q |
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| T |
22687430 |
agaagaagaaaaataagggtctttttgttttgccacttcattcaagagtaacaggagcaagatatccttatatttggataagtatagcgaaagagaatgg |
22687529 |
T |
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| Q |
113 |
ttggaatgttttggttgatgcatgtgcattaggaccaaaagacatggattgttttggtctctcactttttcaaccggattt |
193 |
Q |
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| T |
22687530 |
ttggaatgttttggttgatgcatgtgcattaggaccgaaagacatggattgttttggtctttcactttttcaaccagattt |
22687610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 13 - 193
Target Start/End: Complemental strand, 22751638 - 22751458
Alignment:
| Q |
13 |
agaagaagaaaaataagggtctttttgttttgccacttcattcaagagtaacaggagcaagatatccttatatttggataagtatagcgaaagagaatgg |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22751638 |
agaagaagaaaaataagggtctttttgttttgccacttcattcaagagtaacaggagcaagatatccttatatttggataagtatagcgaaagagaatgg |
22751539 |
T |
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| Q |
113 |
ttggaatgttttggttgatgcatgtgcattaggaccaaaagacatggattgttttggtctctcactttttcaaccggattt |
193 |
Q |
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| T |
22751538 |
ttggaatgttttggttgatgcatgtgcattaggaccgaaagacatggattgttttgttctttcactttttcaaccagattt |
22751458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 15 - 193
Target Start/End: Original strand, 45957934 - 45958109
Alignment:
| Q |
15 |
aagaagaaaaataagggtctttttgttttgccacttcattcaagagtaacaggagcaagatatccttatatttggataagtatagcgaaagagaatggtt |
114 |
Q |
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|||||||||||| ||||||||||| || |||||||||||||| |||||||||||||||||||||||| | ||||| || | ||| |||||||||||| |
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| T |
45957934 |
aagaagaaaaat---ggtctttttgtatttccacttcattcaagggtaacaggagcaagatatccttatctatggatgagaacagcacaagagaatggtt |
45958030 |
T |
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| Q |
115 |
ggaatgttttggttgatgcatgtgcattaggaccaaaagacatggattgttttggtctctcactttttcaaccggattt |
193 |
Q |
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|| |||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||| || |||||||| ||||| |
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| T |
45958031 |
ggcatgttttgattgatgcttgtgcattaggaccaaaagacatggacagttttggtctctctctatttcaaccagattt |
45958109 |
T |
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