View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21227_low_2 (Length: 727)
Name: NF21227_low_2
Description: NF21227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21227_low_2 |
 | |
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| [»] scaffold0027 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 467; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 218 - 712
Target Start/End: Complemental strand, 24455479 - 24454985
Alignment:
| Q |
218 |
atcaaattctgtcaatccaaaggaatcaaagtattgctctctttgagaggagataaaggtagctacccacttgaatccactcaagaagcaagccttgtag |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24455479 |
atcaaattctgtcaatccaaaggaatcaaagtattgctctctttgagaggagataaaggtagctacccacttgaatccactcaagaagcaagccttgtag |
24455380 |
T |
|
| Q |
318 |
ccacttacctttggaataacttcttaggcggaaactcttcgtctcgccctctcggtcctgctgttctcgatggcattgacttcgatatcgaaggaggttc |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
24455379 |
ccacttacctttggaataacttcttaggcggaaactcttcctctcgccctctcggtcctgctgttctcgatggcattgactttgatatcgaaggaggttc |
24455280 |
T |
|
| Q |
418 |
gtcaaaccaacattggggcgaccttgcaaggtatcttaaagggtataatggcaaaaaagtttacataactgcagctcctcagtgtccatttcctgacgct |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
24455279 |
gtcaaaccaacattggggcgaccttgcaaggtatcttaaagggtataatggcaaaaaagtttacataactgcagctcctcagtgtccatttcctgatgct |
24455180 |
T |
|
| Q |
518 |
tggttaggaaatgcactcacaaccggactttttgattttgtttgggtacaattctacaataacccttcttgtcaatacaattccgatgaatttaacaatt |
617 |
Q |
| |
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||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24455179 |
tggttgggaaatgcacttacaacgggactttttgattttgtttgggtacaattctacaataacccttcttgtcaatacaattccgatgaatttaacaatt |
24455080 |
T |
|
| Q |
618 |
tcgaacaagcatggaagcaatggacattagatatacctgttaagaagatatttttggggctaccggcttctctagaggcagcagggagtggatat |
712 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24455079 |
tcgaacaagcatggaagcaatggacattagatatacctgctaagaagatatttttggggctaccggcttctctagaggcagcagggagtggatat |
24454985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 24455672 - 24455899
Alignment:
| Q |
1 |
agcatttgaacaatttgccaatgctaacatgactaatgagagggttaagattgagaatagaaatcttagtgccattgctgatttggaataaattttagac |
100 |
Q |
| |
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|||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24455672 |
agcatttgaacaatttgctaatcctaacatgactaatgagagggttaagattgagaatagaaatcttagtgccattgctgatttggaataaattttagac |
24455771 |
T |
|
| Q |
101 |
taagaagtgttggtggagaatggcttttataaagttcatatgtcacaaacctctttaaaactttggagttttcctcataaaaacgtagcttggcagtcac |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
24455772 |
taagaagtgttggtggagaatggcttttataaagttcatatgtcacaaacctctttaaaactttggagttttcctcataaaaacgtagcttggcaatcac |
24455871 |
T |
|
| Q |
201 |
tttatgtaaaatattttatcaaattctg |
228 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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| T |
24455872 |
tttatgtaaaatattttatcaaattctg |
24455899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 167; E-Value: 5e-89
Query Start/End: Original strand, 227 - 689
Target Start/End: Complemental strand, 24367847 - 24367391
Alignment:
| Q |
227 |
tgtcaatccaaaggaatcaaagtattgctctctttgagaggagataaaggtagctacccacttgaatccactcaagaagcaagccttgtagccacttacc |
326 |
Q |
| |
|
|||||| |||||||||||||||||||| | || | |||||| | || |||||| || ||| |||||| |||| |||| | |||||| ||||||| |
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| T |
24367847 |
tgtcaagccaaaggaatcaaagtattgttgtcgataggaggaggtgctggaagctactcaattgcatccacaaaagatgcaaacagtgtagcaacttacc |
24367748 |
T |
|
| Q |
327 |
tttggaataacttcttaggcggaaactcttcgtctcgccctctcggtcctgctgttctcgatggcattgacttcgatatcgaaggaggttcgtcaaacca |
426 |
Q |
| |
|
|||||||||||||||| || ||||| ||||| ||||||||||| |||||||||||||| |||||||||||||| |||||||||||||| || || ||| |
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| T |
24367747 |
tttggaataacttcttgggtggaaaatcttcatctcgccctcttggtcctgctgttcttgatggcattgactttgatatcgaaggaggatc---aagcca |
24367651 |
T |
|
| Q |
427 |
acattggggcgaccttgcaaggtatcttaaagggtataatggcaaaaaagtttacataactgcagctcctcagtgtccatttcctgacgcttggttagga |
526 |
Q |
| |
|
||||||||| || ||||| ||||| |||||||||| || ||| |||||||||||||||||||||||||| |||||||||||||| |||||| ||||| |
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| T |
24367650 |
acattggggtgatcttgctaggtaccttaaagggttcaa---caagaaagtttacataactgcagctcctcaatgtccatttcctgatgcttggatagga |
24367554 |
T |
|
| Q |
527 |
aatgcactcacaaccggactttttgattttgtttgggtacaattctacaataacccttcttgtcaatacaattccgatgaatttaacaatttcgaacaag |
626 |
Q |
| |
|
|||||||| ||||| ||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||| | |||| ||||| || |||||| | | |
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| T |
24367553 |
aatgcacttacaacaggactttttgattatgtttgggtacaattctacaacaaccctccttgtcaatacaaccctgatgcatttatgaacttcgaagatg |
24367454 |
T |
|
| Q |
627 |
catggaagcaatggacattagatatacctgttaagaagatatttttggggctaccggcttctc |
689 |
Q |
| |
|
| |||||||| ||||||| || ||| |||| || |||||||| || ||| |||| ||||||| |
|
|
| T |
24367453 |
cgtggaagcagtggacatcaggtatccctgcaaacaagatattcttagggttacctgcttctc |
24367391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 218 - 708
Target Start/End: Original strand, 148540 - 149027
Alignment:
| Q |
218 |
atcaaattctgtcaatccaaaggaatcaaagtattgctctctttgagaggagataaaggtagctacccacttgaatccactcaagaagcaagccttgtag |
317 |
Q |
| |
|
||||||| |||||| ||||||| |||||||||||| | || || |||||| | || |||||| || ||| |||||| ||||| |||| ||||| |
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|
| T |
148540 |
atcaaatcatgtcaagccaaaggcatcaaagtattgttgtcattaggaggaggtgctggaagctactcaattgcatccacacaagatgcaaaaagtgtag |
148639 |
T |
|
| Q |
318 |
ccacttacctttggaataacttcttaggcggaaactcttcgtctcgccctctcggtcctgctgttctcgatggcattgacttcgatatcgaaggaggttc |
417 |
Q |
| |
|
| ||||||||||||||||||||||| || ||| | ||||||||||||||||| |||||||||||||| || ||||| ||||||||||| |||||||| |
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|
| T |
148640 |
caacttacctttggaataacttcttgggtggacaatcttcgtctcgccctcttggtcctgctgttcttgacggcatcgacttcgatattgaaggagg--- |
148736 |
T |
|
| Q |
418 |
gtcaaaccaacattggggcgaccttgcaaggtatcttaaagggtataatggcaaaaaagtttacataactgcagctcctcagtgtccatttcctgacgct |
517 |
Q |
| |
|
|||||||||||||||||| || ||||| | ||| |||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
148737 |
gtcaaaccaacattggggtgatcttgccaagtaccttaaagggtataacgggaagaaagtttacataactgcagctcctcagtgtccatttcctgatgct |
148836 |
T |
|
| Q |
518 |
tggttaggaaatgcactcacaaccggactttttgattttgtttgggtacaattctacaataacccttcttgtcaatacaattccgatgaatttaacaatt |
617 |
Q |
| |
|
||| ||||||||||||| ||||| || || ||||||| |||||||||||| ||||||||||||||| |||||||||||||| | | |||| ||| ||| |
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|
| T |
148837 |
tggataggaaatgcacttacaacaggcctctttgattatgtttgggtacagttctacaataaccctccttgtcaatacaatcctggtgaaattagcaacc |
148936 |
T |
|
| Q |
618 |
tcgaacaagcatggaagcaatggacattagatatacctgttaagaagatatttttggggctaccggcttctctagaggcagcagggagtgg |
708 |
Q |
| |
|
| ||| | ||||||||||| ||||||| || ||| |||| || |||||||| |||||| |||| ||||||| |||||| ||||| ||||| |
|
|
| T |
148937 |
ttgaagatgcatggaagcagtggacatcaggtatccctgcaaacaagatattcttggggttacctgcttctccagaggctgcaggcagtgg |
149027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 9e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 314 - 596
Target Start/End: Complemental strand, 19136132 - 19135856
Alignment:
| Q |
314 |
gtagccacttacctttggaataacttcttaggcggaaactcttcgtctcgccctctcggtcctgctgttctcgatggcattgacttcgatatcgaaggag |
413 |
Q |
| |
|
||||| ||||| |||||||| || ||||| || ||| | ||| ||||||| ||||||||||||||||||||||||||||| || ||||| |||||||||| |
|
|
| T |
19136132 |
gtagcaacttatctttggaacaatttcttgggaggacaatctccgtctcgtcctctcggtcctgctgttctcgatggcatcgatttcgacatcgaaggag |
19136033 |
T |
|
| Q |
414 |
gttcgtcaaaccaacattggggcgaccttgcaaggtatcttaaagggtataatggcaaaaaagtttacataactgcagctcctcagtgtccatttcctga |
513 |
Q |
| |
|
| | ||||| |||||| || ||||| ||||| |||||||| || | |||||||| | ||| | | ||||||||||| || || |||||||| |
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|
| T |
19136032 |
gaac---aaacctttattgggatgatcttgctaggtaccttaaaggataca---gcaaaaaattgtacttgtcagcagctcctcaatgcccttttcctga |
19135939 |
T |
|
| Q |
514 |
cgcttggttaggaaatgcactcacaaccggactttttgattttgtttgggtacaattctacaataacccttcttgtcaataca |
596 |
Q |
| |
|
|||||| ||||||| || || | ||| || ||||| |||| ||||||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
19135938 |
tgcttggataggaaaagccctaaaaacaggtcttttcgattgtgtttgggttcaattctacaataaccctccttgtcaataca |
19135856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 545 - 594
Target Start/End: Original strand, 44838281 - 44838330
Alignment:
| Q |
545 |
ctttttgattttgtttgggtacaattctacaataacccttcttgtcaata |
594 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||| ||| |||||||||| |
|
|
| T |
44838281 |
ctttttgactttgtttgggtacaattttacaataatcctccttgtcaata |
44838330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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