View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21227_low_3 (Length: 727)
Name: NF21227_low_3
Description: NF21227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21227_low_3 |
 | |
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| [»] scaffold0027 (1 HSPs) |
| | |
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Alignment Details
Target: chr8 (Bit Score: 661; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 661; E-Value: 0
Query Start/End: Original strand, 8 - 712
Target Start/End: Complemental strand, 24455689 - 24454985
Alignment:
| Q |
8 |
gcaaattgttcaaatgctggcaaaattgtaatctattggggccaaaatggtaatgaaggctcgttagccgaaacttgtgccacaagaaactatgaatatg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24455689 |
gcaaattgttcaaatgctggcaaaattgtaatctattggggccaaaatggtaatgaaggctcgttagccgaaacttgtgccacaagaaactatgaatatg |
24455590 |
T |
|
| Q |
108 |
tgatcatagcattcttaccaacctttatcccaacccaaaatcccatgattaacctagctggtcattgtaatccacagagtactaatggatgcattgccct |
207 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
24455589 |
tgatcatagctttcttaccaacctttatcccaacccaaaatcccatgattaacctagctggtcattgtaatccacagagtgctaatggatgcatggccct |
24455490 |
T |
|
| Q |
208 |
atcctctgatatcaaattctgtcaatccaaaggaatcaaagtattgctctctttgagaggagataaaggtagctacccacttgaatccactcaagaagca |
307 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24455489 |
atcctctgacatcaaattctgtcaatccaaaggaatcaaagtattgctctctttgagaggagataaaggtagctacccacttgaatccactcaagaagca |
24455390 |
T |
|
| Q |
308 |
agccttgtagccacttacctttggaataacttcttaggcggaaactcttcgtctcgccctctcggtcctgctgttctcgatggcattgacttcgatatcg |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
24455389 |
agccttgtagccacttacctttggaataacttcttaggcggaaactcttcctctcgccctctcggtcctgctgttctcgatggcattgactttgatatcg |
24455290 |
T |
|
| Q |
408 |
aaggaggttcgtcaaaccaacattggggcgaccttgcaaggtatcttaaagggtataatggcaaaaaagtttacataactgcagctcctcagtgtccatt |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24455289 |
aaggaggttcgtcaaaccaacattggggcgaccttgcaaggtatcttaaagggtataatggcaaaaaagtttacataactgcagctcctcagtgtccatt |
24455190 |
T |
|
| Q |
508 |
tcctgacgcttggttaggaaatgcactcacaaccggactttttgattttgtttgggtacaattctacaataacccttcttgtcaatacaattccgatgaa |
607 |
Q |
| |
|
|||||| |||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24455189 |
tcctgatgcttggttgggaaatgcacttacaacgggactttttgattttgtttgggtacaattctacaataacccttcttgtcaatacaattccgatgaa |
24455090 |
T |
|
| Q |
608 |
tttaacaatttcgaacaagcatggaagcaatggacattagatatacctgttaagaagatatttttggggctaccggcttctctagaggcagcagggagtg |
707 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24455089 |
tttaacaatttcgaacaagcatggaagcaatggacattagatatacctgctaagaagatatttttggggctaccggcttctctagaggcagcagggagtg |
24454990 |
T |
|
| Q |
708 |
gatat |
712 |
Q |
| |
|
||||| |
|
|
| T |
24454989 |
gatat |
24454985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 15 - 689
Target Start/End: Complemental strand, 24368056 - 24367391
Alignment:
| Q |
15 |
gttcaaatgctggcaaaattgtaatctattggggccaaaatggtaatgaaggctcgttagccgaaacttgtgccacaagaaactatgaatatgtgatcat |
114 |
Q |
| |
|
|||| ||||| || ||||||| |||||| |||||||| || || || || ||| ||||||| || ||||||||||| |||||||||||||||||||||| |
|
|
| T |
24368056 |
gttctaatgcaggaaaaattgcaatctactggggccagaacggaaacgagggcacgttagctgaggcttgtgccacaggaaactatgaatatgtgatcat |
24367957 |
T |
|
| Q |
115 |
agcattcttaccaacctttatcccaacccaaaatcccatgattaacctagctggtcattgtaatccacagagtactaatggatgcattgccctatcctct |
214 |
Q |
| |
|
||| |||||||| ||||| ||||| ||| |||||||| ||||||||||||||| ||||| | |||| ||||||||| || | || ||| |
|
|
| T |
24367956 |
agccttcttaccgaccttcggagatggccaaactccgatgattaatctagctggtcattgtgatccatacagta---atggatgcactggcttaagctca |
24367860 |
T |
|
| Q |
215 |
gatatcaaattctgtcaatccaaaggaatcaaagtattgctctctttgagaggagataaaggtagctacccacttgaatccactcaagaagcaagccttg |
314 |
Q |
| |
|
|| ||||| | |||||| |||||||||||||||||||| | || | |||||| | || |||||| || ||| |||||| |||| |||| | || |
|
|
| T |
24367859 |
gacatcaagtcatgtcaagccaaaggaatcaaagtattgttgtcgataggaggaggtgctggaagctactcaattgcatccacaaaagatgcaaacagtg |
24367760 |
T |
|
| Q |
315 |
tagccacttacctttggaataacttcttaggcggaaactcttcgtctcgccctctcggtcctgctgttctcgatggcattgacttcgatatcgaaggagg |
414 |
Q |
| |
|
|||| ||||||||||||||||||||||| || ||||| ||||| ||||||||||| |||||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
24367759 |
tagcaacttacctttggaataacttcttgggtggaaaatcttcatctcgccctcttggtcctgctgttcttgatggcattgactttgatatcgaaggagg |
24367660 |
T |
|
| Q |
415 |
ttcgtcaaaccaacattggggcgaccttgcaaggtatcttaaagggtataatggcaaaaaagtttacataactgcagctcctcagtgtccatttcctgac |
514 |
Q |
| |
|
|| || |||||||||||| || ||||| ||||| |||||||||| || ||| |||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
24367659 |
atc---aagccaacattggggtgatcttgctaggtaccttaaagggttcaa---caagaaagtttacataactgcagctcctcaatgtccatttcctgat |
24367566 |
T |
|
| Q |
515 |
gcttggttaggaaatgcactcacaaccggactttttgattttgtttgggtacaattctacaataacccttcttgtcaatacaattccgatgaatttaaca |
614 |
Q |
| |
|
|||||| ||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||| | |||| ||||| | |
|
|
| T |
24367565 |
gcttggataggaaatgcacttacaacaggactttttgattatgtttgggtacaattctacaacaaccctccttgtcaatacaaccctgatgcatttatga |
24367466 |
T |
|
| Q |
615 |
atttcgaacaagcatggaagcaatggacattagatatacctgttaagaagatatttttggggctaccggcttctc |
689 |
Q |
| |
|
| |||||| | || |||||||| ||||||| || ||| |||| || |||||||| || ||| |||| ||||||| |
|
|
| T |
24367465 |
acttcgaagatgcgtggaagcagtggacatcaggtatccctgcaaacaagatattcttagggttacctgcttctc |
24367391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 708
Target Start/End: Original strand, 148326 - 149027
Alignment:
| Q |
1 |
agcattggcaaattgttcaaatgctggcaaaattgtaatctattggggccaaaatggtaatgaaggctcgttagccgaaacttgtgccacaagaaactat |
100 |
Q |
| |
|
|||| |||||||| ||| ||||||||||||||| ||| ||||||||||| ||||| || || ||| |||||||||| ||||||||||| | ||||| |
|
|
| T |
148326 |
agcactggcaaatgattctaatgctggcaaaatttcaatttattggggccagaatggaaacgagggcacgttagccgaggcttgtgccacagggaactac |
148425 |
T |
|
| Q |
101 |
gaatatgtgatcatagcattcttaccaacctttatcccaacccaaaatcccatgattaacctagctggtcattgtaatccacagagtactaatggatgca |
200 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||| ||| ||||| || |||||||||||||| ||||| | || | | | |||| |
|
|
| T |
148426 |
gaatatgtgatcatagccttcttaccaaccttcggtgatggccaaactccaatgatcaatctagctggtcattgcgatccatacagca---acgagtgca |
148522 |
T |
|
| Q |
201 |
ttgccctatcctctgatatcaaattctgtcaatccaaaggaatcaaagtattgctctctttgagaggagataaaggtagctacccacttgaatccactca |
300 |
Q |
| |
|
|| | || ||| || ||||||| |||||| ||||||| |||||||||||| | || || |||||| | || |||||| || ||| |||||| || |
|
|
| T |
148523 |
ctggcttaagctcagacatcaaatcatgtcaagccaaaggcatcaaagtattgttgtcattaggaggaggtgctggaagctactcaattgcatccacaca |
148622 |
T |
|
| Q |
301 |
agaagcaagccttgtagccacttacctttggaataacttcttaggcggaaactcttcgtctcgccctctcggtcctgctgttctcgatggcattgacttc |
400 |
Q |
| |
|
||| |||| |||||| ||||||||||||||||||||||| || ||| | ||||||||||||||||| |||||||||||||| || ||||| |||||| |
|
|
| T |
148623 |
agatgcaaaaagtgtagcaacttacctttggaataacttcttgggtggacaatcttcgtctcgccctcttggtcctgctgttcttgacggcatcgacttc |
148722 |
T |
|
| Q |
401 |
gatatcgaaggaggttcgtcaaaccaacattggggcgaccttgcaaggtatcttaaagggtataatggcaaaaaagtttacataactgcagctcctcagt |
500 |
Q |
| |
|
||||| |||||||| |||||||||||||||||| || ||||| | ||| |||||||||||||| || || |||||||||||||||||||||||||||| |
|
|
| T |
148723 |
gatattgaaggagg---gtcaaaccaacattggggtgatcttgccaagtaccttaaagggtataacgggaagaaagtttacataactgcagctcctcagt |
148819 |
T |
|
| Q |
501 |
gtccatttcctgacgcttggttaggaaatgcactcacaaccggactttttgattttgtttgggtacaattctacaataacccttcttgtcaatacaattc |
600 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||| ||||| || || ||||||| |||||||||||| ||||||||||||||| |||||||||||||| | |
|
|
| T |
148820 |
gtccatttcctgatgcttggataggaaatgcacttacaacaggcctctttgattatgtttgggtacagttctacaataaccctccttgtcaatacaatcc |
148919 |
T |
|
| Q |
601 |
cgatgaatttaacaatttcgaacaagcatggaagcaatggacattagatatacctgttaagaagatatttttggggctaccggcttctctagaggcagca |
700 |
Q |
| |
|
| |||| ||| ||| | ||| | ||||||||||| ||||||| || ||| |||| || |||||||| |||||| |||| ||||||| |||||| ||| |
|
|
| T |
148920 |
tggtgaaattagcaaccttgaagatgcatggaagcagtggacatcaggtatccctgcaaacaagatattcttggggttacctgcttctccagaggctgca |
149019 |
T |
|
| Q |
701 |
gggagtgg |
708 |
Q |
| |
|
|| ||||| |
|
|
| T |
149020 |
ggcagtgg |
149027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 9e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 314 - 596
Target Start/End: Complemental strand, 19136132 - 19135856
Alignment:
| Q |
314 |
gtagccacttacctttggaataacttcttaggcggaaactcttcgtctcgccctctcggtcctgctgttctcgatggcattgacttcgatatcgaaggag |
413 |
Q |
| |
|
||||| ||||| |||||||| || ||||| || ||| | ||| ||||||| ||||||||||||||||||||||||||||| || ||||| |||||||||| |
|
|
| T |
19136132 |
gtagcaacttatctttggaacaatttcttgggaggacaatctccgtctcgtcctctcggtcctgctgttctcgatggcatcgatttcgacatcgaaggag |
19136033 |
T |
|
| Q |
414 |
gttcgtcaaaccaacattggggcgaccttgcaaggtatcttaaagggtataatggcaaaaaagtttacataactgcagctcctcagtgtccatttcctga |
513 |
Q |
| |
|
| | ||||| |||||| || ||||| ||||| |||||||| || | |||||||| | ||| | | ||||||||||| || || |||||||| |
|
|
| T |
19136032 |
gaac---aaacctttattgggatgatcttgctaggtaccttaaaggataca---gcaaaaaattgtacttgtcagcagctcctcaatgcccttttcctga |
19135939 |
T |
|
| Q |
514 |
cgcttggttaggaaatgcactcacaaccggactttttgattttgtttgggtacaattctacaataacccttcttgtcaataca |
596 |
Q |
| |
|
|||||| ||||||| || || | ||| || ||||| |||| ||||||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
19135938 |
tgcttggataggaaaagccctaaaaacaggtcttttcgattgtgtttgggttcaattctacaataaccctccttgtcaataca |
19135856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 545 - 594
Target Start/End: Original strand, 44838281 - 44838330
Alignment:
| Q |
545 |
ctttttgattttgtttgggtacaattctacaataacccttcttgtcaata |
594 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||| ||| |||||||||| |
|
|
| T |
44838281 |
ctttttgactttgtttgggtacaattttacaataatcctccttgtcaata |
44838330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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