View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21227_low_5 (Length: 590)
Name: NF21227_low_5
Description: NF21227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21227_low_5 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 549; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 15 - 590
Target Start/End: Complemental strand, 37768199 - 37767626
Alignment:
| Q |
15 |
aataggaacaatacaatgtgttattttcggttttattgttgagagggatttgaaccaatggaaacttggttggaatatcaggctcctcaccgttgttttt |
114 |
Q |
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| T |
37768199 |
aataggaacaatacaatgtgttattttcggttttattgttgagagggatttgaaccaatggaaacttggttgggatatcaggctcctcaccgttgttttt |
37768100 |
T |
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| Q |
115 |
tcggtatgcttcatgttaatgttaattcattgctagaactatggtcatatcatatgatttgtgaaattgatgaatcataaaggatttgatgttttgttta |
214 |
Q |
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| T |
37768099 |
tcggtatgcttcatgttaatgttaattcattgctagaactatggtcatatcatatgatttgtgaaattgatgaatcataaaggatttgatgttttgttta |
37768000 |
T |
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| Q |
215 |
atgtgttaattatttgaagggagtttttgcatctggaataatgatttttgtcatggcatgggtcgtacagaagaaaggacctttatatgcgtctgctttc |
314 |
Q |
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| T |
37767999 |
atgtgttaattatttgaagggagtttttgcatctggaataatgatttttgtcatggcatgggtcgtacagaagaaaggacctttatatgcgtctgctttc |
37767900 |
T |
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| Q |
315 |
aaccctctaatgcttttgattgtagctttcgtcgcatccatgcttttggatgagaagttaaacctcggaaggtatatattatatactaaatctaagttct |
414 |
Q |
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| T |
37767899 |
aaccctctaatgcttttgattgtagctttcgtcgcatccatgctcttggatgagaagttaaacctcggaaggtatatattatatactaaatctaagttca |
37767800 |
T |
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| Q |
415 |
tttaaatgagtatgcatggatcctttgcagagagattgaaccaatttgaatgttgttattggatctgatgatatatagttggtctggtctggtcgtgatg |
514 |
Q |
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| T |
37767799 |
tttaaatgagtatgcatggatcctttgca--gagattgaaccaatttgaatgttgttattggatctgatgatatatagttggtctggtctggtcgtgatg |
37767702 |
T |
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| Q |
515 |
aatatgcaaatttatgatgtttttctttctgttttgctagcctttgtattcataatttgatttaatatagtttttt |
590 |
Q |
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| T |
37767701 |
aatatgcaaatttatgatgtttttctttttgttttgctagcctttgtattcataatttgatttaatatagtttttt |
37767626 |
T |
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