View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21227_low_8 (Length: 390)
Name: NF21227_low_8
Description: NF21227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21227_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 373
Target Start/End: Original strand, 36795279 - 36795651
Alignment:
| Q |
1 |
ggggtgatgtgtctcctattcttcctcaattttataaatttacgaaacgtagtcaccacatgggtttgatttgattatgctcttgctgaaatagaaaaaa |
100 |
Q |
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| T |
36795279 |
ggggtgatgtgtctcctattcttcctcaattttataaatttacgaaacgtagtcaccacatgggttttatttgattatgctcttgctgaaatagaaaaaa |
36795378 |
T |
|
| Q |
101 |
gtatccacgttccacgtgctagacaccgttcatgtggccatgagaaaataagtgtgtagttgtgtactagactactagtgttgctttcacaagttgaatc |
200 |
Q |
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| T |
36795379 |
gtatccacgttccacgtgctagacaccgttcatgtggccatgagaaaataagtgtgtagtagtgtactagactactagtgttgctttcacaagttgaatc |
36795478 |
T |
|
| Q |
201 |
tctccttgcaagtggaaacccaagtttttcagtttttctgcgaacacgtgcacaaatgctttgaggttttttcttagtagcaagaggcaaagcacctacc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36795479 |
tctccttgcaagtggaaacccaagtttttcagtttttctgcgaacacgtgcacaaatgctttgaggttttttcttagtagcaagaggcaaagcacctacc |
36795578 |
T |
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| Q |
301 |
acatatgccttgagtactacaatatccccaaataaaggatccctttgaataaatttaatggaatcaaaaaagt |
373 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36795579 |
acatatgccttgagtactacaatatccccaaataaaggatccctttgaataaatttaatggaatcaaaaaagt |
36795651 |
T |
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