View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21227_low_9 (Length: 362)
Name: NF21227_low_9
Description: NF21227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21227_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 19587918 - 19588269
Alignment:
| Q |
1 |
atggtcgaggatgggaaaaagaagaaagaagacgatgacattgctgaaaccctaaggcttcaatatgaagcacttcaagaaaaacttgaagaagaggagg |
100 |
Q |
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| T |
19587918 |
atggtcgaggatgggaaaaagaagaaagaagacgacgacatcgctaaaaccctaaggcttcaatatgaagcacttcaagaaaaacttgaagaagaggagg |
19588017 |
T |
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| Q |
101 |
ataatttgaaatctctcaaagtcactgagtcacagaagagtgattttaatgttcatgattggtggaataattctattgatgatatggatttagcatctct |
200 |
Q |
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| T |
19588018 |
ataatttgaaatctctcaaagtcactgagtcacaaaagagtgattttaatgtccatgattggtggaataattctattgatgatatggatttagcatctct |
19588117 |
T |
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| Q |
201 |
tgaagacttcaagaattctttggacagtttcaagaacaatttacgtgcagcaagccaagcagagaagtccaatttacatccaaatttaaacattgctact |
300 |
Q |
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| T |
19588118 |
tgaagacttcaaaaattctttggacagtttcaagaataatttacgtgcagcaagccaagcagagaagtccaatttgcatccaaatttaaacattgctact |
19588217 |
T |
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| Q |
301 |
taagagtacttatgttaataatagtgatatttcaacttatgtgtgacctttg |
352 |
Q |
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| T |
19588218 |
taagagtacttatgttaataatagtgatatttcaacttatgtgtgacctttg |
19588269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 155 - 283
Target Start/End: Original strand, 12895548 - 12895676
Alignment:
| Q |
155 |
atgattggtggaataattctattgatgatatggatttagcatctcttgaagacttcaagaattctttggacagtttcaagaacaatttacgtgcagcaag |
254 |
Q |
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| T |
12895548 |
atgattggtggaataaatctattgatgatatggatttaacatctcttgaagatattaccacttctttggataaattgaagattaatttatcagtagcaag |
12895647 |
T |
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| Q |
255 |
ccaagcagagaagtccaatttacatccaa |
283 |
Q |
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| T |
12895648 |
ccaagccaagaagttcaatttacatccaa |
12895676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 71
Target Start/End: Original strand, 12895396 - 12895461
Alignment:
| Q |
6 |
cgaggatgggaaaaagaagaaagaagacgatgacattgctgaaaccctaaggcttcaatatgaagc |
71 |
Q |
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| T |
12895396 |
cgagaatgagaaaaagaatcaacaagatgatgacattgttgaaaccctaaggcttcgatacgaagc |
12895461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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