View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21228_high_2 (Length: 554)
Name: NF21228_high_2
Description: NF21228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21228_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-141; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 32502616 - 32502894
Alignment:
| Q |
1 |
ttgcagatattgcacacaatcaaaagaaattaccttctttatgttagaggtatatgataaaagacacttgtgtgtcttcaccaaacagttgaagattttt |
100 |
Q |
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| T |
32502616 |
ttgcagatattgcacacaatcaaaagaaattaccttctttatgttagaggtatatgataaaagacactcgtgtgtcttcaccaaacagttgaagattttt |
32502715 |
T |
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| Q |
101 |
agagatggtcaagttatatggtatcagatccgccttggtggactagagatcgatttttgctgtccccatttatctaataataagttaaatctccgcacaa |
200 |
Q |
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| T |
32502716 |
agagatggtcaagttatatggtatcagatccgccttggtggactagagatcgatttttgctgtccccatttctctaataataagttaaatctccgcacaa |
32502815 |
T |
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| Q |
201 |
aaataaatagacatgcgtattgtccacgagctcaaaagtgtcttgcataagtgagtgcatcatattgaactatagtttg |
279 |
Q |
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| T |
32502816 |
aaataaatagacatgcgtattgcccacgagctcaaaaggctcttgcataagtgagtgcgtcatattgaactatagtttg |
32502894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 315 - 534
Target Start/End: Original strand, 32502935 - 32503154
Alignment:
| Q |
315 |
atgaaaagaaaaattgaaatggtctttacttatctgcaatgacttggagtcttctaaattatggcttctcgtataaatgcaaataaaccactatgcctaa |
414 |
Q |
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| T |
32502935 |
atgaaaagaaaaattgaaatggtctttacttatctgcaatgacttcgagtcttctaaattatggcttctcgtataaatgcaaataaaccactatgcctaa |
32503034 |
T |
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| Q |
415 |
acattttaaaggctccctttttaacttctctataaatacatataaccttataagggcttttcctcaagttaaaaactaaatacttatggcagttgagttg |
514 |
Q |
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| T |
32503035 |
acattttaaaggctccctttttaacttctgtataaatacatataaccttataagggcttttcctcgagttaaaaactaaatacttatggcagttgagttg |
32503134 |
T |
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| Q |
515 |
agaggcttccaaaagctaga |
534 |
Q |
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| T |
32503135 |
agaggcttccaaaagctaga |
32503154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 375 - 421
Target Start/End: Original strand, 59291 - 59337
Alignment:
| Q |
375 |
atggcttctcgtataaatgcaaataaaccactatgcctaaacatttt |
421 |
Q |
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| T |
59291 |
atggtttctcatataaatgcaaataaggcactatgcctaaacatttt |
59337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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