View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21228_high_9 (Length: 263)
Name: NF21228_high_9
Description: NF21228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21228_high_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 9580169 - 9580412
Alignment:
| Q |
1 |
aattgcacatttgatgctgtaagaaatgtcaataatagatagttaaatatctacacatgttactcactagtacttatagtaactcttctaaaaacctcat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
9580169 |
aattgcacatttgatgctgtaagaaatgtcaataatagatagttaaatatctacacatgttactcactagtacttatagtatctcttctaaaaacctcat |
9580268 |
T |
|
| Q |
101 |
cacaaagacgtaaattcgcatgttttctgcggtgagagacactaataatagatagctattcatcacaaatgtcactcatcagtcactccaccaaaccaaa |
200 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9580269 |
cacaaagacgtaaattcgcgtgttttctacggtgagaaacactaataatagatagctattcatcacaaatgtcactcatcagtcactccaccaaaccaaa |
9580368 |
T |
|
| Q |
201 |
aacaacttattattgtccaactcaagatttgttccattactaat |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9580369 |
aacaacttattattgtccaactcaagatttgttccattactaat |
9580412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 55
Target Start/End: Complemental strand, 1786774 - 1786724
Alignment:
| Q |
5 |
gcacatttgatgctgtaagaaatgtcaataatagatagttaaatatctaca |
55 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
1786774 |
gcacatttgatactgtaagaaatctcaataatagatagttaaatatctaca |
1786724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University