View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21228_low_1 (Length: 906)
Name: NF21228_low_1
Description: NF21228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21228_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 782; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 782; E-Value: 0
Query Start/End: Original strand, 17 - 888
Target Start/End: Original strand, 9300261 - 9301130
Alignment:
| Q |
17 |
ctcactaatgatcatcctatgaggactagagccaagtctggcattgtgcagcctagactgaagcccactttgttacttactatgaatctaaaattgctaa |
116 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
9300261 |
ctcactaatgatcgtcctatgaggactagagccaagtctggctttgtgcagcctagactgaagcccactttgttccttactatgaatctaaaattgctaa |
9300360 |
T |
|
| Q |
117 |
acaagcactctataaacccccaatggcatgctactatgcaagaagagtttgattcattagaaagaaataacacttgggattgggtttctctcccaacaaa |
216 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
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| T |
9300361 |
acaagcactctataaacccc-aatggcatgctactatgcaagaagagtttgattcattagaaagaaataacacttgagatggggtttctctcccaacaaa |
9300459 |
T |
|
| Q |
217 |
aagaaccgccatatataggatgcaaatgggtattcagagtcaaagaaaatgttgatggcgtcaataggctcaatgcacgtttagtggctaaagggtttca |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
9300460 |
aagaaccgccatatataggatgcaaatgggtattcagagtcaaagaaaatgttgatggagtcaataggctcaatgcacgtttagtggctaaagggtttca |
9300559 |
T |
|
| Q |
317 |
ccaactgcaagattttgatttta-tgagacattctaccatgtcatcgaacttgtcatcatcagacttgtcctctctcttgctatttcctacaactagact |
415 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||| |
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| T |
9300560 |
ccaactgcaagattttgattttaatgagacattctaccatgtcatcaaacttgtcaccatcagacttttcctctctcttgctatttcctacaactagact |
9300659 |
T |
|
| Q |
416 |
attcatcaacttgatgtaaataatgccttcttaaatggcaacttgaatgaggaagtgtacgtgcaagaaccccaaggctttgaatcttcacacccttcac |
515 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |
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|
| T |
9300660 |
attcatcaacttgatgtaaataatgccttcttaaatggcaacttgaatgaggaagtgtacgtgcaacaaccccaaggctttgaatcttcacacccttaac |
9300759 |
T |
|
| Q |
516 |
ttgtttgtaaactcaacaaggctctctatggcctcgagcaagctcctagacaatggtttgagagactcaaaaccaccttattgtctttgggtttttagga |
615 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9300760 |
ttgtttgtaaactcaacaaggctctctatggcctcgagcaagctcctagacaatggtttgagagactcaaaaccaccttattgtctttgggtttttagga |
9300859 |
T |
|
| Q |
616 |
tagcaatccctccctcttcagatatactattaacatcatatagtttacctctctaagtgtatgttgatgatattatcatcactgcgagctccacttattt |
715 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
9300860 |
tagcaatccctccctcttcagatatactattaacatcatatagtttac--ctcgaagtgtatgttgatgatattatcatcactgggagctccacttattt |
9300957 |
T |
|
| Q |
716 |
tgttctcagcatagtctattagctcaatgctaccttctcacttaagcacgttggtgatcttaactattttcttggtgttgaagttaaaaagcagtctaat |
815 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |
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| T |
9300958 |
tgttctcagcgtagtctattagctcaatgctaccttctcacttaagcacgttggtgatcttgactattttcttggtgttgaagttaaaaaacagtctaat |
9301057 |
T |
|
| Q |
816 |
ggtacacttttgctcattcatagcaagtatctcagtctattagctcaatcctattcttcatgctcgcacaaag |
888 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9301058 |
ggtacacttttgctcattcatagcaagtatctcagtctattagctcaatcctattcttcatgctcgcacaaag |
9301130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 1e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 410 - 576
Target Start/End: Original strand, 3218829 - 3218995
Alignment:
| Q |
410 |
tagactattcatcaacttgatgtaaataatgccttcttaaatggcaacttgaatgaggaagtgtacgtgcaagaaccccaaggctttgaatcttcacacc |
509 |
Q |
| |
|
||||||||||| ||||| ||||| |||||||| ||||||||||||| | | ||| ||||| ||| ||||| |||| ||||||||||| || || | | |
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| T |
3218829 |
tagactattcagcaactagatgttaataatgctttcttaaatggcacccttggtgaagaagtatacatgcaacaaccacaaggctttgagtcctcttatc |
3218928 |
T |
|
| Q |
510 |
cttcacttgtttgtaaactcaacaaggctctctatggcctcgagcaagctcctagacaatggtttga |
576 |
Q |
| |
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| || |||||||| |||||||||||| || | ||||||||| | || |||||||| ||||||||||| |
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|
| T |
3218929 |
catctcttgtttgcaaactcaacaagactttatatggcctcaaacaggctcctaggcaatggtttga |
3218995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 390 - 453
Target Start/End: Complemental strand, 32457955 - 32457892
Alignment:
| Q |
390 |
ctcttgctatttcctacaactagactattcatcaacttgatgtaaataatgccttcttaaatgg |
453 |
Q |
| |
|
||||||||||||||||||| | | ||||||| || || ||||| |||||||||||||||||||| |
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|
| T |
32457955 |
ctcttgctatttcctacaagtggcctattcaacagctggatgtcaataatgccttcttaaatgg |
32457892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 533 - 576
Target Start/End: Original strand, 39581865 - 39581908
Alignment:
| Q |
533 |
aaggctctctatggcctcgagcaagctcctagacaatggtttga |
576 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
39581865 |
aaggctctctatggcctcaagcaagctcctagacaatggtttga |
39581908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 539 - 573
Target Start/End: Complemental strand, 3212882 - 3212848
Alignment:
| Q |
539 |
ctctatggcctcgagcaagctcctagacaatggtt |
573 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| |
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|
| T |
3212882 |
ctctatggcctcaagcaagctcctagacaatggtt |
3212848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 533 - 576
Target Start/End: Complemental strand, 6870297 - 6870254
Alignment:
| Q |
533 |
aaggctctctatggcctcgagcaagctcctagacaatggtttga |
576 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
6870297 |
aaggctctctatggcctcaagcaagctcctagacaatggtttga |
6870254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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