View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21228_low_11 (Length: 256)
Name: NF21228_low_11
Description: NF21228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21228_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 7e-98; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 61 - 249
Target Start/End: Original strand, 45568641 - 45568829
Alignment:
| Q |
61 |
caattagaaatgaacatcaacatctattttaaaaaatacagaaaaagattaaagatacacatgcagcaccggtgtatacatagctcaataacttttacaa |
160 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45568641 |
caattagaaatgaacatcaacatctattttaaaaaatacagaaaaagattaaagatacacatgcagcaccggtgtatacatagctcaataacttttacaa |
45568740 |
T |
|
| Q |
161 |
aacaagcttttggctgtctctttagttcttgccttaccatttgttaaataatgttctcggatcctagtttttgcttcctttttcctttg |
249 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
45568741 |
aacaagcttttggctgtctctttagttcttgccttaccatttgttaaataatgttcttggatcctagtttttgcttcctttttcttttg |
45568829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 61 - 249
Target Start/End: Original strand, 45093950 - 45094138
Alignment:
| Q |
61 |
caattagaaatgaacatcaacatctattttaaaaaatacagaaaaagattaaagatacacatgcagcaccggtgtatacatagctcaataacttttacaa |
160 |
Q |
| |
|
|||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||| |||||| ||| |
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| T |
45093950 |
caattagaaatgaagaccaacatctattttcaaaaatacagaaaaagattaaagatacccatgcaaaaccagtgtatacatagctcaatgactttttcaa |
45094049 |
T |
|
| Q |
161 |
aacaagcttttggctgtctctttagttcttgccttaccatttgttaaataatgttctcggatcctagtttttgcttcctttttcctttg |
249 |
Q |
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|||||||||| || |||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||| |||| |
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| T |
45094050 |
aacaagctttgcgccgtctctctagttcttgccttaccattttttaaataatgtactcggatcctagtttttgcttcctatttcttttg |
45094138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 61 - 165
Target Start/End: Original strand, 44641433 - 44641537
Alignment:
| Q |
61 |
caattagaaatgaacatcaacatctattttaaaaaatacagaaaaagattaaagatacacatgcagcaccggtgtatacatagctcaataacttttacaa |
160 |
Q |
| |
|
|||||||||||| ||| |||||| |||||| |||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||| ||||||| |
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| T |
44641433 |
caattagaaatggacaccaacatatattttcgaaaatacagaaaaagattaaagatacaccttcagcaccaatgtatacatagctcaataacctttacaa |
44641532 |
T |
|
| Q |
161 |
aacaa |
165 |
Q |
| |
|
||||| |
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|
| T |
44641533 |
aacaa |
44641537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 45568647 - 45568588
Alignment:
| Q |
1 |
ctaattgcaatttatgctattaataacaatgatcatatgcgtctcattctgattttcctt |
60 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45568647 |
ctaattgcaatttatgctattaataacaatgatcatatgcgtctcattctgattttcctt |
45568588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 61 - 197
Target Start/End: Original strand, 44666903 - 44667038
Alignment:
| Q |
61 |
caattagaaatgaacatcaacatctattttaaaaaatacagaaaaagattaaagatacacatgcagcaccggtgtatacatagctcaataa-cttttaca |
159 |
Q |
| |
|
|||||||||||| ||| |||||| |||||| ||||||| ||||| |||||||||||||| | ||||||| ||||||| |||||||||| |||||||| |
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|
| T |
44666903 |
caattagaaatggacaccaacatatattttcaaaaataaagaaa--gattaaagatacaccttcagcaccacggtatacacagctcaataaacttttaca |
44667000 |
T |
|
| Q |
160 |
aaacaagcttttggctgtctctttagttcttgccttac |
197 |
Q |
| |
|
||||||||||| ||| |||||| |||||||| |||||| |
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| T |
44667001 |
aaacaagctttgggccgtctctctagttcttaccttac |
44667038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 61 - 197
Target Start/End: Original strand, 44686227 - 44686362
Alignment:
| Q |
61 |
caattagaaatgaacatcaacatctattttaaaaaatacagaaaaagattaaagatacacatgcagcaccggtgtatacatagctcaataa-cttttaca |
159 |
Q |
| |
|
|||||||||||| ||| |||||| |||||| ||||||| ||||| |||||||||||||| | ||||||| ||||||| |||||||||| |||||||| |
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| T |
44686227 |
caattagaaatggacaccaacatatattttcaaaaataaagaaa--gattaaagatacaccttcagcaccacggtatacacagctcaataaacttttaca |
44686324 |
T |
|
| Q |
160 |
aaacaagcttttggctgtctctttagttcttgccttac |
197 |
Q |
| |
|
||||||||||| ||| ||||| |||||||| |||||| |
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|
| T |
44686325 |
aaacaagctttgggccatctctctagttcttaccttac |
44686362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 45093956 - 45093899
Alignment:
| Q |
1 |
ctaattgcaatttatgctattaataacaatgatcatatgcgtctcattctgattttcctt |
60 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
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|
| T |
45093956 |
ctaattgcaatttatgctattaataacaatgattgtatgcgtctcat--tgattttcctt |
45093899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 193
Target Start/End: Original strand, 45103093 - 45103228
Alignment:
| Q |
68 |
aaatgaacatcaacatctattttaaaaaatacagaaaaagattaaagat--------acacatgcagcaccggtgtata--catagctcaataactttta |
157 |
Q |
| |
|
||||| ||||||||| ||||||||||||||| |||||||||||| || |||||||||||||| |||||| |||||||||||||| ||| |
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| T |
45103093 |
aaatggacatcaacacagattttaaaaaatacataaaaagattaaacatgatactgcacacatgcagcaccaatgtatatacatagctcaataacctttg |
45103192 |
T |
|
| Q |
158 |
caaaacaagcttttggctgtctctttagttcttgcc |
193 |
Q |
| |
|
|||||||||||| | |||| ||| ||||||||||| |
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|
| T |
45103193 |
caaaacaagcttcagactgtatctctagttcttgcc |
45103228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 217 - 249
Target Start/End: Original strand, 44667052 - 44667084
Alignment:
| Q |
217 |
tcggatcctagtttttgcttcctttttcctttg |
249 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |
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|
| T |
44667052 |
tcggatcctagtttttgcttcctttttcttttg |
44667084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 217 - 249
Target Start/End: Original strand, 44686376 - 44686408
Alignment:
| Q |
217 |
tcggatcctagtttttgcttcctttttcctttg |
249 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |
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|
| T |
44686376 |
tcggatcctagtttttgcttcctttttcttttg |
44686408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 88 - 244
Target Start/End: Original strand, 9797366 - 9797528
Alignment:
| Q |
88 |
tttaaaaaatacagaaaaagattaaagatacacatgcagcaccggtgtatacata----gctcaataacttttacaaaacaagcttttggct-gtctctt |
182 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| || ||||| ||| ||||||||||||| ||| |||||| |
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|
| T |
9797366 |
tttaaaaaatacagaaacagattaaagatacacatgcagcaccagtgtatacatacatagcataataatctttgcaaaacaagctttgggcccgtctctc |
9797465 |
T |
|
| Q |
183 |
tagttcttgccttaccatttgttaaataatg-ttctcggatcctagtttttgcttcctttttc |
244 |
Q |
| |
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|||||||| ||||||||| |||||||||||| |||| | |||||||||||||||||||||||| |
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|
| T |
9797466 |
tagttcttcccttaccatgtgttaaataatgtttcttgaatcctagtttttgcttcctttttc |
9797528 |
T |
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