View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21228_low_19 (Length: 221)
Name: NF21228_low_19
Description: NF21228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21228_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 1e-98; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 20 - 209
Target Start/End: Original strand, 3434008 - 3434197
Alignment:
| Q |
20 |
gaccatgcaagagtagcaatgattagtaaaatggagcctaagaaccaattatccttgcttgaggaacttgaaatatttgcattgctatgaggtatatatt |
119 |
Q |
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| T |
3434008 |
gaccatgcaagagtagcaatgattagtaaaatggagcctaagaaccaattatccttgcttgaggaacttgtaatatttgcattactatgaggtatatatt |
3434107 |
T |
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| Q |
120 |
tagtccacatcaactccaaaactggtcctttgtacaaggtcatcaacattgccccagccacagttaaaatggttccaatcacctttgctt |
209 |
Q |
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| T |
3434108 |
tagtccacatcaactccaaaactggtcctttgtacaaggtcatcaacattgccccagccacagttaaaatggttccaatcacctttgctt |
3434197 |
T |
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Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 22 - 209
Target Start/End: Original strand, 3374978 - 3375174
Alignment:
| Q |
22 |
ccatgcaagagtagcaatgattagtaaaatggagcctaagaaccaattatccttgcttgaggaacttgaaatatttg---cattgct------atgaggt |
112 |
Q |
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| T |
3374978 |
ccatgcaatggtagaaatgattagtaaaatggaacctaaaaaccaattattcttgcttgaggatcttgtgatgtttgttgcattgcttttactatgaaat |
3375077 |
T |
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| Q |
113 |
atatatttagtccacatcaactccaaaactggtcctttgtacaaggtcatcaacattgccccagccacagttaaaatggttccaatcacctttgctt |
209 |
Q |
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| T |
3375078 |
atatgtccagtccaaaataactccacaataggacctttgtataaggtcatcaacattgccccagccacagttaaaatggttccaatcacctttgctt |
3375174 |
T |
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