View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21228_low_2 (Length: 599)
Name: NF21228_low_2
Description: NF21228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21228_low_2 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 573; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 573; E-Value: 0
Query Start/End: Original strand, 19 - 599
Target Start/End: Complemental strand, 35094825 - 35094245
Alignment:
| Q |
19 |
tgatggtcagcgcaggtaatgaaaagctgtgtggagcccctttaggagcatgttcgtcgaataagaaatcatcaataaatttgagccgtatcgtggtcgt |
118 |
Q |
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| T |
35094825 |
tgatggtcagcgcaggtaatgaaaagctgtgtggagcccctttaggagcatgttcgtcgaataagaaatcatcaataaatttgagccgtatcgtggtcgt |
35094726 |
T |
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| Q |
119 |
ggttcttgtaagtcttgcactgcttgtgattgcagcagtaatattatatgtccttgttaaaagaagaaaaactaaacaacaagaagaattaggagaagga |
218 |
Q |
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| T |
35094725 |
ggttcttgtaagtcttgcactgcttgtgattgcagcagtaatattatatgtccttgttaaaagaagaaaaactaaacaacaagaagaattaggagaagga |
35094626 |
T |
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| Q |
219 |
gctggagtagctgcaaacaccagcaacagggataataataatcaaaagaaaggatcatcatcaaataataatacagacgagggttcggtaagatcacgcg |
318 |
Q |
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| T |
35094625 |
gctggagtagctgcaaacaccagcaacagggataataataatcaaaagaaaggatcatcatcaaataataatacagacgagggttcggtaagatcacgca |
35094526 |
T |
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| Q |
319 |
caagcagtaataccagtagcagaaaaggagatagcaagttgtcctttgtgagggaagaagtatcagcacaatttgatttgcaagatcttttgagagccgc |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35094525 |
caagcagtaataccagtagcagaaaaggagatagcaagttgtcctttgtgagggaagaagtatcagcacaatttgatttgcaagatcttttgagagccgc |
35094426 |
T |
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| Q |
419 |
tgctgagatattaggaagtggttgtcacagttcatcctataaggctgctttgttgactggccctactgttgtcgtcaaaagatacaaacaaatgaacaat |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35094425 |
tgctgagatattaggaagtggttgtcacagttcatcctataaggctgctttgttgactggccctactgttgtcgtcaaaagatacaaacaaatgaacaat |
35094326 |
T |
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| Q |
519 |
gttaataggccagagtttcaagagcacatgagaagactgggaaggttgaatcatccgaatctccttcctctcgtagcttac |
599 |
Q |
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| T |
35094325 |
gttaataggccagagtttcaagagcacatgagaagactaggaaggttgaatcatccgaatctccttcctctcgtagcttac |
35094245 |
T |
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