View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21228_low_5 (Length: 437)
Name: NF21228_low_5
Description: NF21228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21228_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 383
Target Start/End: Complemental strand, 36591633 - 36591261
Alignment:
| Q |
1 |
atattcgcaccacactatagacttaacttctctgaaccgttgctatgacaagggtgattcagctagcttgaaagtgatttctcaccagctacaatgaatt |
100 |
Q |
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| T |
36591633 |
atatttgcaccacactataaacttagcttctctgaaccgttgctatgacaagggtgattcagctagcctgaaagtgatttttcaccagctacaatgaatt |
36591534 |
T |
|
| Q |
101 |
gaga-agacttagcttctgattgattttattattaagattattagtagtaatatataggcactagatcgttcctctaaagtgtaacgtaagaagctcttt |
199 |
Q |
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| T |
36591533 |
cagctagccttaaccgttgcat------attatta---ttattagtaataatatatagggcctagattgttcctctaaagtgtaacgtaagaagctcttt |
36591443 |
T |
|
| Q |
200 |
gagtacacaatgccaccttacacctacta---gatttgaatggtcttgtggagtatcaaaattaaatgttaataaaacaagcttggattattgcttcgga |
296 |
Q |
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||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||| || ||||||||||||||||||||||||| ||||||| |
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| T |
36591442 |
gagtacacaatgccaccttacacctactactagctttgaatggtcttttggagtatcaatat-----gttaataaaacaagcttggattatttcttcgga |
36591348 |
T |
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| Q |
297 |
caaaacgtgtatttaaatattacgttccaaactaaattacccctaaaaagcaataataatccaacataaaagccttaatccaaaagc |
383 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36591347 |
caaaacgtgtatttaaatattacgttccaaactaaattacccctaaaaagcaataataatccaacataaaagccttaatccaaaagc |
36591261 |
T |
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