View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21228_low_7 (Length: 301)

Name: NF21228_low_7
Description: NF21228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21228_low_7
NF21228_low_7
[»] chr5 (30 HSPs)
chr5 (111-247)||(30398670-30398806)
chr5 (103-245)||(30339828-30339970)
chr5 (93-281)||(29870808-29870996)
chr5 (103-250)||(30243675-30243822)
chr5 (110-254)||(30434471-30434615)
chr5 (110-281)||(30481954-30482125)
chr5 (91-247)||(17419182-17419338)
chr5 (101-245)||(29851957-29852101)
chr5 (103-247)||(30058944-30059088)
chr5 (110-247)||(30748299-30748436)
chr5 (81-209)||(4380358-4380486)
chr5 (1-69)||(30339574-30339642)
chr5 (132-246)||(30473963-30474077)
chr5 (85-155)||(30678525-30678595)
chr5 (103-232)||(30429542-30429671)
chr5 (110-246)||(29710280-29710416)
chr5 (1-69)||(30243421-30243489)
chr5 (1-69)||(30678220-30678288)
chr5 (116-242)||(30205102-30205228)
chr5 (138-242)||(30246138-30246242)
chr5 (1-69)||(30399051-30399119)
chr5 (5-69)||(30482390-30482454)
chr5 (211-247)||(30678644-30678680)
chr5 (110-149)||(30482158-30482197)
chr5 (103-165)||(30523003-30523065)
chr5 (103-165)||(30563343-30563405)
chr5 (1-69)||(4380644-4380712)
chr5 (1-69)||(30059343-30059411)
chr5 (1-69)||(30434808-30434876)
chr5 (1-69)||(30748629-30748697)
[»] chr7 (2 HSPs)
chr7 (81-247)||(26705919-26706085)
chr7 (1-65)||(26706322-26706386)
[»] chr4 (6 HSPs)
chr4 (81-251)||(20298028-20298198)
chr4 (116-241)||(20301381-20301503)
chr4 (110-246)||(20303939-20304074)
chr4 (142-246)||(52350551-52350655)
chr4 (175-246)||(13615449-13615520)
chr4 (117-148)||(20297992-20298023)
[»] chr1 (1 HSPs)
chr1 (175-246)||(7098003-7098074)


Alignment Details
Target: chr5 (Bit Score: 85; Significance: 2e-40; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 111 - 247
Target Start/End: Complemental strand, 30398806 - 30398670
Alignment:
Q  111 attgtgatgcttgccggagggtattcaacacctcacttctgttgaggttctgacaattaataattgcccaacaataaaggagcgatgcaaggaaggaacc 210  Q
    |||| ||||||| ||||||||||||  ||||||||||||| |||||||||||||||| ||| ||||||||||| ||||||| |||||||| || |||||     
T  30398806 attgcgatgctttccggagggtattagacacctcacttctcttgaggttctgacaatcaatgattgcccaacattaaaggaacgatgcaaagagggaaca 30398707  T
Q  211 ggggaggattgagacaagatagctcatattccaaaaa 247  Q
    ||||||||||| |||||||||||||||||||||||||    
T  30398706 ggggaggattgggacaagatagctcatattccaaaaa 30398670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 103 - 245
Target Start/End: Original strand, 30339828 - 30339970
Alignment:
Q  103 tgtgaaagattgtgatgcttgccggagggtattcaacacctcacttctgttgaggttctgacaattaataattgcccaacaataaaggagcgatgcaagg 202  Q
    |||||| ||||| ||||||||||||||||||||| ||||||||||||| ||||| ||||||| || | ||||||||||||| || |||| |||||||| |    
T  30339828 tgtgaaggattgcgatgcttgccggagggtattcgacacctcacttctcttgagcttctgactatcattaattgcccaacattagaggaacgatgcaaag 30339927  T
Q  203 aaggaaccggggaggattgagacaagatagctcatattccaaa 245  Q
    | ||||| ||||||||||| |||||||||||||||||||||||    
T  30339928 agggaacaggggaggattgggacaagatagctcatattccaaa 30339970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 93 - 281
Target Start/End: Complemental strand, 29870996 - 29870808
Alignment:
Q  93 gatttggaattgtgaaagattgtgatgcttgccggagggtattcaacacctcacttctgttgaggttctgacaattaataattgcccaacaataaaggag 192  Q
    |||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||  ||||| ||||| ||||| |   |||||||||| || ||||     
T  29870996 gatttggaattgtgaaggattgcgatgcttgccggagggtattcgacacctcacttcacttgagcttctggcaattgagggttgcccaacattagaggaa 29870897  T
Q  193 cgatgcaaggaaggaaccggggaggattgagacaagatagctcatattccaaaaagagagtttcatgactattaagaaacagagacgtt 281  Q
    |||||||| || ||||| ||||||||||| |||||||||||||||||||||| || | |||||   ||  |||||||| ||||||||||    
T  29870896 cgatgcaaagagggaacaggggaggattgggacaagatagctcatattccaataatacagtttaccgaggattaagaagcagagacgtt 29870808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 103 - 250
Target Start/End: Original strand, 30243675 - 30243822
Alignment:
Q  103 tgtgaaagattgtgatgcttgccggagggtattcaacacctcacttctgttgaggttctgacaattaataattgcccaacaataaaggagcgatgcaagg 202  Q
    |||||| ||||| ||||||||||||||||||||| ||||||||||||| |||||||| |||  ||| |||| || |||||| || |||| |||||||| |    
T  30243675 tgtgaaggattgcgatgcttgccggagggtattcgacacctcacttctcttgaggttttgaatatttataaatgtccaacattagaggaacgatgcaaag 30243774  T
Q  203 aaggaaccggggaggattgagacaagatagctcatattccaaaaagag 250  Q
    | ||||| ||||||||||| ||||||||||||||||||||||||||||    
T  30243775 agggaacaggggaggattgggacaagatagctcatattccaaaaagag 30243822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 110 - 254
Target Start/End: Complemental strand, 30434615 - 30434471
Alignment:
Q  110 gattgtgatgcttgccggagggtattcaacacctcacttctgttgaggttctgacaattaataattgcccaacaataaaggagcgatgcaaggaaggaac 209  Q
    ||||| ||||||||||||||||||||| ||||||||||||| ||||| ||||| | || | | ||||||||||| ||||||| |||||||| || |||||    
T  30434615 gattgcgatgcttgccggagggtattcgacacctcacttctcttgagcttctgtctatcattgattgcccaacattaaaggaacgatgcaaagagggaac 30434516  T
Q  210 cggggaggattgagacaagatagctcatattccaaaaagagagtt 254  Q
     ||||||||||| |||||||||||||||||||||| || ||||||    
T  30434515 aggggaggattgggacaagatagctcatattccaagaatagagtt 30434471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 110 - 281
Target Start/End: Complemental strand, 30482125 - 30481954
Alignment:
Q  110 gattgtgatgcttgccggagggtattcaacacctcacttctgttgaggttctgacaattaataattgcccaacaataaaggagcgatgcaaggaaggaac 209  Q
    ||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||    | ||||||||| || |||| |||||||| || |||||    
T  30482125 gattgcgatgcttgccggagggtattcgacacctcacttctcttgaggttctgacaatttgggaatgcccaacattagaggaacgatgcaaagagggaac 30482026  T
Q  210 cggggaggattgagacaagatagctcatattccaaaaagagagtttcatgactattaagaaacagagacgtt 281  Q
      |||||||||| ||||||||||||||||||||||||| | |||||   ||  |||||||| ||||||||||    
T  30482025 atgggaggattgggacaagatagctcatattccaaaaatacagtttaccgaggattaagaagcagagacgtt 30481954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 91 - 247
Target Start/End: Original strand, 17419182 - 17419338
Alignment:
Q  91 acgatttggaattgtgaaagattgtgatgcttgccggagggtattcaacacctcacttctgttgaggttctgacaattaataattgcccaacaataaagg 190  Q
    |||||| | ||||||||| | ||| |||||||||  |||||||||| |||||||||||||   ||| ||||||  ||| || | | ||||||| || |||    
T  17419182 acgattggaaattgtgaaggtttgagatgcttgctagagggtattcgacacctcacttctcccgagtttctgaacatttatgactccccaacattagagg 17419281  T
Q  191 agcgatgcaaggaaggaaccggggaggattgagacaagatagctcatattccaaaaa 247  Q
    | ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  17419282 aacgatgcaaggagggaaccggggaggattgggacaagatagctcatattccaaaaa 17419338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 101 - 245
Target Start/End: Complemental strand, 29852101 - 29851957
Alignment:
Q  101 attgtgaaagattgtgatgcttgccggagggtattcaacacctcacttctgttgaggttctgacaattaataattgcccaacaataaaggagcgatgcaa 200  Q
    ||||| || ||||| ||||||||||||||||||||  ||||||||||||| ||||| ||||| ||||||| |||||||||||| || |||| ||||||||    
T  29852101 attgtaaaggattgagatgcttgccggagggtattggacacctcacttctcttgagcttctgtcaattaaaaattgcccaacattagaggaacgatgcaa 29852002  T
Q  201 ggaaggaaccggggaggattgagacaagatagctcatattccaaa 245  Q
     |  |||||  | |||||||| ||||||||| |||||||||||||    
T  29852001 agtgggaacatgtgaggattgggacaagatatctcatattccaaa 29851957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 103 - 247
Target Start/End: Complemental strand, 30059088 - 30058944
Alignment:
Q  103 tgtgaaagattgtgatgcttgccggagggtattcaacacctcacttctgttgaggttctgacaattaataattgcccaacaataaaggagcgatgcaagg 202  Q
    |||||| ||||| |||| |||||||||||||||| ||||||||||||| ||||| ||||||| || | |  ||||| |||| ||||||| |||||||||     
T  30059088 tgtgaaggattgcgatgtttgccggagggtattcgacacctcacttctcttgagcttctgactatcattggttgccgaacattaaaggaacgatgcaaga 30058989  T
Q  203 aaggaaccggggaggattgagacaagatagctcatattccaaaaa 247  Q
    |  |||| ||||||||||| ||||||||| |||||||||||||||    
T  30058988 agcgaacaggggaggattgggacaagatatctcatattccaaaaa 30058944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 110 - 247
Target Start/End: Complemental strand, 30748436 - 30748299
Alignment:
Q  110 gattgtgatgcttgccggagggtattcaacacctcacttctgttgaggttctgacaattaataattgcccaacaataaaggagcgatgcaaggaaggaac 209  Q
    ||||| ||||||||||||||||||||| ||||||||||||| ||||| ||||    || | | ||||||||||| || |||| |||||||| || |||||    
T  30748436 gattgcgatgcttgccggagggtattcgacacctcacttctcttgagcttcttgatatcattgattgcccaacattagaggaacgatgcaaagagggaac 30748337  T
Q  210 cggggaggattgagacaagatagctcatattccaaaaa 247  Q
      |||||||||| |||||||||||||||||||||||||    
T  30748336 atgggaggattgggacaagatagctcatattccaaaaa 30748299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 81 - 209
Target Start/End: Complemental strand, 4380486 - 4380358
Alignment:
Q  81 taggactctaacgatttggaattgtgaaagattgtgatgcttgccggagggtattcaacacctcacttctgttgaggttctgacaattaataattgccca 180  Q
    ||||||||||||||||||| ||||  || ||||| ||||||||||||||||||||| ||||||||||||| |||||||||||| ||| | |  |||||||    
T  4380486 taggactctaacgatttgggattgcaaaggattgcgatgcttgccggagggtattcgacacctcacttctcttgaggttctgagaatcattggttgccca 4380387  T
Q  181 acaataaaggagcgatgcaaggaaggaac 209  Q
    ||| || |||| |||||||| || |||||    
T  4380386 acattagaggaacgatgcaaagagggaac 4380358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 30339574 - 30339642
Alignment:
Q  1 catgtcttccatctcttgaagacctcaacgtagggggatgtaacactgagttactgaggttaatctcta 69  Q
    ||||||||||||||||| |||||||| | || | ||||||||||| |||||||||||||| ||||||||    
T  30339574 catgtcttccatctcttaaagacctctatgttgagggatgtaacaatgagttactgaggtcaatctcta 30339642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 132 - 246
Target Start/End: Complemental strand, 30474077 - 30473963
Alignment:
Q  132 tattcaacacctcacttctgttgaggttctgacaattaataattgcccaacaataaaggagcgatgcaaggaaggaaccggggaggattgagacaagata 231  Q
    ||||||||||||||||||  ||||| || ||| ||||     |||||||||| ||||||||||||  ||| |||||||||| ||||| || |||||||||    
T  30474077 tattcaacacctcacttcacttgagtttttgaaaattcgaggttgcccaacattaaaggagcgattgaagaaaggaaccggtgaggactgggacaagata 30473978  T
Q  232 gctcatattccaaaa 246  Q
    || || |||||||||    
T  30473977 gcgcacattccaaaa 30473963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 85 - 155
Target Start/End: Original strand, 30678525 - 30678595
Alignment:
Q  85 actctaacgatttggaattgtgaaagattgtgatgcttgccggagggtattcaacacctcacttctgttga 155  Q
    ||||||| |||| | ||||||||| ||||| ||||||||||||||||||||| ||||||||| ||| ||||    
T  30678525 actctaaagattcgtaattgtgaaggattgcgatgcttgccggagggtattcgacacctcacatctcttga 30678595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 232
Target Start/End: Complemental strand, 30429671 - 30429542
Alignment:
Q  103 tgtgaaagattgtgatgcttgccggagggtattcaacacctcacttctgttgaggttctgacaattaataattgcccaacaataaaggagcgatgcaagg 202  Q
    |||||||||||| |||||||||| || |||||||  |||||||| ||  ||||||||||| ||||| ||  ||||||| |  ||| ||||||||| ||||    
T  30429671 tgtgaaagattgagatgcttgccagaaggtattctgcacctcacatcacttgaggttctggcaatttatggttgcccagctgtaacggagcgatgtaagg 30429572  T
Q  203 aaggaaccggggaggattgagacaagatag 232  Q
    | ||||  || ||||| || ||||||||||    
T  30429571 agggaataggagaggactgggacaagatag 30429542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 110 - 246
Target Start/End: Original strand, 29710280 - 29710416
Alignment:
Q  110 gattgtgatgcttgccggagggtattcaacacctcacttctgttgaggttctgacaattaataattgcccaacaataaaggagcgatgcaaggaaggaac 209  Q
    ||||| ||||||| ||||||||||||   | |||||||||| |||||||||||    || |||||| | ||||| || |||| ||||||||||| ||| |    
T  29710280 gattgcgatgctttccggagggtattgctcgcctcacttctcttgaggttctgtatttttataatttctcaacattagaggaacgatgcaaggagggagc 29710379  T
Q  210 cggggaggattgagacaagatagctcatattccaaaa 246  Q
      |||||||||  ||||||||||| ||| ||||||||    
T  29710380 aagggaggattaggacaagatagcgcatgttccaaaa 29710416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 30243421 - 30243489
Alignment:
Q  1 catgtcttccatctcttgaagacctcaacgtagggggatgtaacactgagttactgaggttaatctcta 69  Q
    ||||||||||||||||| ||||||||   ||| ||| |||||||| |||||||||||||| ||||||||    
T  30243421 catgtcttccatctcttaaagacctctttgtatgggaatgtaacaatgagttactgaggtcaatctcta 30243489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 30678220 - 30678288
Alignment:
Q  1 catgtcttccatctcttgaagacctcaacgtagggggatgtaacactgagttactgaggttaatctcta 69  Q
    ||||||||||||||||| |||| ||| |  || |||||||||||| |||||||||||||| ||||||||    
T  30678220 catgtcttccatctcttaaagaactcgagatatggggatgtaacaatgagttactgaggtcaatctcta 30678288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 242
Target Start/End: Complemental strand, 30205228 - 30205102
Alignment:
Q  116 gatgcttgccggagggtattcaacacctcacttctgttgaggttctgacaattaataattgcccaacaataaaggagcgatgcaaggaaggaaccgggga 215  Q
    ||||||| ||||| ||||||| ||| ||||||||| | ||| |||||||||||  |  ||| |||||| || | |||||||||||||| ||||| || ||    
T  30205228 gatgcttaccggaaggtattcgacatctcacttctctggagcttctgacaattcgtggttgtccaacactagaagagcgatgcaaggagggaacaggaga 30205129  T
Q  216 ggattgagacaagatagctcatattcc 242  Q
    ||| ||  |||||||| | ||||||||    
T  30205128 ggactggtacaagatatcgcatattcc 30205102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 138 - 242
Target Start/End: Original strand, 30246138 - 30246242
Alignment:
Q  138 acacctcacttctgttgaggttctgacaattaataattgcccaacaataaaggagcgatgcaaggaagga-accggggaggattgagacaagatagctca 236  Q
    ||||||||||||| | ||||||||||  ||| || |||  |||||| |||||||||||||||| |||||| ||  |||||||| | ||||||||| ||||    
T  30246138 acacctcacttctctcgaggttctgaatattcatcattctccaacattaaaggagcgatgcaa-gaaggagacatgggaggatcgggacaagatatctca 30246236  T
Q  237 tattcc 242  Q
    ||||||    
T  30246237 tattcc 30246242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 30399119 - 30399051
Alignment:
Q  1 catgtcttccatctcttgaagacctcaacgtagggggatgtaacactgagttactgaggttaatctcta 69  Q
    ||||||||||||||||| ||  |||| | |||  ||||||||||| |||||||||||||| ||||||||    
T  30399119 catgtcttccatctcttaaatccctctatgtattgggatgtaacaatgagttactgaggtcaatctcta 30399051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 30482454 - 30482390
Alignment:
Q  5 tcttccatctcttgaagacctcaacgtagggggatgtaacactgagttactgaggttaatctcta 69  Q
    ||||||||||||||||| |||| | || |  |||||||||| |||||||||||||| ||||||||    
T  30482454 tcttccatctcttgaaggcctctatgtggatggatgtaacaatgagttactgaggtcaatctcta 30482390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 247
Target Start/End: Original strand, 30678644 - 30678680
Alignment:
Q  211 ggggaggattgagacaagatagctcatattccaaaaa 247  Q
    ||||||||||| |||||||||||||||||||||||||    
T  30678644 ggggaggattgggacaagatagctcatattccaaaaa 30678680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 110 - 149
Target Start/End: Complemental strand, 30482197 - 30482158
Alignment:
Q  110 gattgtgatgcttgccggagggtattcaacacctcacttc 149  Q
    ||||| ||||||||||||||||||||| ||||||||||||    
T  30482197 gattgagatgcttgccggagggtattcgacacctcacttc 30482158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 165
Target Start/End: Original strand, 30523003 - 30523065
Alignment:
Q  103 tgtgaaagattgtgatgcttgccggagggtattcaacacctcacttctgttgaggttctgaca 165  Q
    |||||||||||| |||||||||| || |||||||  |||||||| ||  ||||||||||||||    
T  30523003 tgtgaaagattgagatgcttgccagaaggtattcgccacctcacatcacttgaggttctgaca 30523065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 165
Target Start/End: Original strand, 30563343 - 30563405
Alignment:
Q  103 tgtgaaagattgtgatgcttgccggagggtattcaacacctcacttctgttgaggttctgaca 165  Q
    |||||||||||| |||||||||| || |||||||  |||||||| ||  ||||||||||||||    
T  30563343 tgtgaaagattgagatgcttgccagaaggtattcgccacctcacatcacttgaggttctgaca 30563405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 4380712 - 4380644
Alignment:
Q  1 catgtcttccatctcttgaagacctcaacgtagggggatgtaacactgagttactgaggttaatctcta 69  Q
    |||||| |||||||||| || |||||   || | ||||||||||| |||||||||||||| ||||||||    
T  4380712 catgtcatccatctcttaaacacctcgttgttgagggatgtaacaatgagttactgaggtcaatctcta 4380644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 30059411 - 30059343
Alignment:
Q  1 catgtcttccatctcttgaagacctcaacgtagggggatgtaacactgagttactgaggttaatctcta 69  Q
    ||||||||||||||||| ||  |||||  |||  || |||||||| |||||||||||||| ||||||||    
T  30059411 catgtcttccatctcttaaatccctcactgtatcggaatgtaacaatgagttactgaggtcaatctcta 30059343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 30434876 - 30434808
Alignment:
Q  1 catgtcttccatctcttgaagacctcaacgtagggggatgtaacactgagttactgaggttaatctcta 69  Q
    ||||||||||||||||| ||||||||   || |  ||| |||||| |||||||||||||| ||||||||    
T  30434876 catgtcttccatctcttaaagacctcggtgtcgatggacgtaacaatgagttactgaggtcaatctcta 30434808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 30748697 - 30748629
Alignment:
Q  1 catgtcttccatctcttgaagacctcaacgtagggggatgtaacactgagttactgaggttaatctcta 69  Q
    ||||||||||||||||| ||  |||| |  || ||| |||||||| |||||||||||||| ||||||||    
T  30748697 catgtcttccatctcttaaatccctccatttatgggaatgtaacaatgagttactgaggtcaatctcta 30748629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 81 - 247
Target Start/End: Complemental strand, 26706085 - 26705919
Alignment:
Q  81 taggactctaacgatttggaattgtgaaagattgtgatgcttgccggagggtattcaacacctcacttctgttgaggttctgacaattaataattgccca 180  Q
    ||||||||||  ||||||| ||||| || || || |||||||||| |||||||||| ||||||||||||| ||||| |||||| ||||   | |||||||    
T  26706085 taggactctagagatttgggattgtaaaggaatgcgatgcttgccagagggtattcgacacctcacttctcttgagtttctgagaatttggagttgccca 26705986  T
Q  181 acaataaaggagcgatgcaaggaaggaaccggggaggattgagacaagatagctcatattccaaaaa 247  Q
    ||| || |||| |||||||| || ||||| ||||||||||| |||||||||||||||||||||||||    
T  26705985 acattagaggaacgatgcaaagagggaacaggggaggattgggacaagatagctcatattccaaaaa 26705919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 26706386 - 26706322
Alignment:
Q  1 catgtcttccatctcttgaagacctcaacgtagggggatgtaacactgagttactgaggttaatc 65  Q
    ||||||||||||||||| ||  |||||| ||   ||||||||||| |||||||||||||| ||||    
T  26706386 catgtcttccatctcttaaatccctcaatgtttcgggatgtaacaatgagttactgaggtcaatc 26706322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 4e-32; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 81 - 251
Target Start/End: Original strand, 20298028 - 20298198
Alignment:
Q  81 taggactctaacgatttggaattgtgaaagattgtgatgcttgccggagggtattcaacacctcacttctgttgaggttctgacaattaataattgccca 180  Q
    ||||||||||| |||||||  ||||||| |||||  ||||||||| || || |||||||||||||||||| ||||| ||||||| ||   | |||||||     
T  20298028 taggactctaaagatttggggttgtgaaggattgcaatgcttgccagaaggcattcaacacctcacttctcttgagcttctgactatcggttattgcccc 20298127  T
Q  181 acaataaaggagcgatgcaaggaaggaaccggggaggattgagacaagatagctcatattccaaaaagaga 251  Q
    ||| |||||   |||||||| || ||||| ||||||||||| |||||||||||||||||||||||||||||    
T  20298128 acattaaagttacgatgcaaagagggaacaggggaggattgggacaagatagctcatattccaaaaagaga 20298198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 116 - 241
Target Start/End: Original strand, 20301381 - 20301503
Alignment:
Q  116 gatgcttgccggagggtattcaacacctcacttctgttgaggttctgacaattaataattgcccaacaataaaggagcgatgcaaggaaggaaccgggga 215  Q
    |||||||| |||||||||||  |||||||| |||| | ||||||||||  ||| ||   || |||||||||||||||| ||||||||| | ||| || ||    
T  20301381 gatgcttgtcggagggtatttgacacctcatttctctcgaggttctgaatattcat---tgtccaacaataaaggagcaatgcaaggaggaaacaggaga 20301477  T
Q  216 ggattgagacaagatagctcatattc 241  Q
    ||||||  |||||||| |||||||||    
T  20301478 ggattgtaacaagatatctcatattc 20301503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 110 - 246
Target Start/End: Original strand, 20303939 - 20304074
Alignment:
Q  110 gattgtgatgcttgccggagggtattcaacacctcacttctgttgaggttctgacaattaataattgcccaacaataaaggagcgatgcaaggaaggaac 209  Q
    ||||| |||||||||| || ||||||| |  |||||||||  |||||||| |||  ||| || | ||||||||| ||||||| || ||||||   |||||    
T  20303939 gattgagatgcttgcctgaaggtattcgattcctcacttcacttgaggttttgagtatttatgaatgcccaacattaaaggaacggtgcaagacgggaac 20304038  T
Q  210 cggggaggattgagacaagatagctcatattccaaaa 246  Q
     || |||||||| ||||||||||| ||||||||||||    
T  20304039 aggcgaggattg-gacaagatagcgcatattccaaaa 20304074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 142 - 246
Target Start/End: Complemental strand, 52350655 - 52350551
Alignment:
Q  142 ctcacttctgttgaggttctgacaattaataattgcccaacaataaaggagcgatgcaaggaaggaaccggggaggattgagacaagatagctcatattc 241  Q
    ||||||||  ||||||| ||||| |||  | ||||||||||| ||||||||||||| || |||||||| |||||||| |  ||||| ||||| || ||||    
T  52350655 ctcacttcacttgaggtactgactatttgtgattgcccaacattaaaggagcgatgtaatgaaggaacaggggaggactatgacaaaatagcgcacattc 52350556  T
Q  242 caaaa 246  Q
    |||||    
T  52350555 caaaa 52350551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 175 - 246
Target Start/End: Complemental strand, 13615520 - 13615449
Alignment:
Q  175 tgcccaacaataaaggagcgatgcaaggaaggaaccggggaggattgagacaagatagctcatattccaaaa 246  Q
    ||||||||| | ||| ||||||||||||| |||||  |||| || || ||||||||||| ||||||||||||    
T  13615520 tgcccaacattgaagaagcgatgcaaggagggaacatgggaagactgggacaagatagcgcatattccaaaa 13615449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 117 - 148
Target Start/End: Original strand, 20297992 - 20298023
Alignment:
Q  117 atgcttgccggagggtattcaacacctcactt 148  Q
    ||||||||||||||||||||||||||||||||    
T  20297992 atgcttgccggagggtattcaacacctcactt 20298023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 246
Target Start/End: Complemental strand, 7098074 - 7098003
Alignment:
Q  175 tgcccaacaataaaggagcgatgcaaggaaggaaccggggaggattgagacaagatagctcatattccaaaa 246  Q
    ||||||||| | | ||||||||||||||| ||||| ||||| || || ||||||||||| ||||||||||||    
T  7098074 tgcccaacattgacggagcgatgcaaggagggaacaggggaagactgggacaagatagcccatattccaaaa 7098003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University