View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21228_low_8 (Length: 291)
Name: NF21228_low_8
Description: NF21228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21228_low_8 |
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| [»] scaffold0294 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 20 - 284
Target Start/End: Original strand, 11797049 - 11797313
Alignment:
| Q |
20 |
caataagcaagttgaattgggtgacttttgtggctcaagaagtaatgaatacataaacgcnnnnnnnctcattttcattgaagaagaaaatttggttcaa |
119 |
Q |
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| T |
11797049 |
caataagcaagttgaattgtgtgacttttgtggctcaagaagtaatgaatacataaacgcaaaaaaactcattttcattgaagaagaaaatttggttcaa |
11797148 |
T |
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| Q |
120 |
tggaggaatacaatgaagttttggtagaagctcaattaactgatcttgtagatggtgctgttgattatacaggacaacctgcgattagatccaaatctgg |
219 |
Q |
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| T |
11797149 |
tggaggaatacaatgacgttttgttagaagctcaattaactgatcttgtagatggtgctgttgattatagagggcaacctgcaatcagatccaaatctgg |
11797248 |
T |
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| Q |
220 |
ttattggcgatccgcttggtttatcataggtactatttgagccatttatcttgaatcctttgcta |
284 |
Q |
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| T |
11797249 |
ttattggcgatccgcttggtttatcataggtactacttgagccatttatcttgaatcctttgcta |
11797313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 39 - 252
Target Start/End: Original strand, 11778498 - 11778710
Alignment:
| Q |
39 |
ggtgacttttgtggctcaagaagtaatgaatacataaacgcnnnnnnnctcattttcattgaagaagaaaatttggttcaatggaggaatacaatgaagt |
138 |
Q |
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| T |
11778498 |
ggtgacttttatggaccaagaagtaatgaatacataaacgcaaacaa-ctcattttgattgaagaagaaaatttggttcgatggaagaatacaatgatgt |
11778596 |
T |
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| Q |
139 |
tttggtagaagctcaattaactgatcttgtagatggtgctgttgattatacaggacaacctgcgattagatccaaatctggttattggcgatccgcttgg |
238 |
Q |
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| T |
11778597 |
tttgttagatgctaaattagctgatcttgtagatggtgctgttgattatagaggacaacctgccatcagatccaaatctggttattggctatccgcttgg |
11778696 |
T |
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| Q |
239 |
tttatcataggtac |
252 |
Q |
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| T |
11778697 |
tttatcataggtac |
11778710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 119 - 251
Target Start/End: Original strand, 11701497 - 11701626
Alignment:
| Q |
119 |
atggaggaatacaatgaagttttggtagaagctcaattaactgatcttgtagatggtgctgttgattatacaggacaacctgcgattagatccaaatctg |
218 |
Q |
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| T |
11701497 |
atggaagaatccaatgaagtgttgttagaagctcaattatct---cttgttgatggcgctgttgactacaatggacagcctgcagttaggtttaaatctg |
11701593 |
T |
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| Q |
219 |
gttattggcgatccgcttggtttatcataggta |
251 |
Q |
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| T |
11701594 |
gttattggagatccgcttggtttatcataggta |
11701626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 190 - 253
Target Start/End: Original strand, 11695776 - 11695839
Alignment:
| Q |
190 |
aggacaacctgcgattagatccaaatctggttattggcgatccgcttggtttatcataggtact |
253 |
Q |
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| T |
11695776 |
aggacaacctgccgttagatccaaaactggctattggagatccgcttggtttatcataggtact |
11695839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 252
Target Start/End: Original strand, 11675245 - 11675293
Alignment:
| Q |
204 |
ttagatccaaatctggttattggcgatccgcttggtttatcataggtac |
252 |
Q |
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| T |
11675245 |
ttaggtccaaaactggttattggagatccgcttggtttatcattggtac |
11675293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 252
Target Start/End: Original strand, 11683524 - 11683572
Alignment:
| Q |
204 |
ttagatccaaatctggttattggcgatccgcttggtttatcataggtac |
252 |
Q |
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| T |
11683524 |
ttaggtccaaaactggttattggagatccgcttggtttatcattggtac |
11683572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 190 - 252
Target Start/End: Original strand, 15852 - 15914
Alignment:
| Q |
190 |
aggacaacctgcgattagatccaaatctggttattggcgatccgcttggtttatcataggtac |
252 |
Q |
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| T |
15852 |
aggacaacctgccgttaggtccaaatctggttactggagatccgcttggtttatcataggtac |
15914 |
T |
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