View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21228_low_9 (Length: 264)
Name: NF21228_low_9
Description: NF21228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21228_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 4 - 257
Target Start/End: Complemental strand, 9580114 - 9579861
Alignment:
| Q |
4 |
ttgacaaatagaattagaagaattactatataagtacgctactatttgcattctacttcaaaattgatacaatacaagtctacattttgtttataggaat |
103 |
Q |
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| T |
9580114 |
ttgacaaatagaattagaagaattactatataagtacactactatttgcattctacttcaaaattgatacaatacaagtctacattttgtttataggaat |
9580015 |
T |
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| Q |
104 |
aataaatttgtgatatgctctatgcattaaactttggtgtcttgttattgagttgtgtcgcttagtttagagatattgaatcttaaagcacnnnnnnnng |
203 |
Q |
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| T |
9580014 |
aataaatttgtgatttgctctatgcatttaactttggtgtcttggtattgcattgtgtcgcttagtttagggatattgaatcttaaagcacttttttttg |
9579915 |
T |
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| Q |
204 |
cagtgttatactgcaatactaaatggaacttcatttactgtgtgacttcatctc |
257 |
Q |
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| T |
9579914 |
cagtgttatactgcaatactaaatggaacttcacttactgtgtgacttcatctc |
9579861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 35 - 147
Target Start/End: Original strand, 1786853 - 1786965
Alignment:
| Q |
35 |
aagtacgctactatttgcattctacttcaaaattgatacaatacaagtctacattttgtttataggaataataaatttgtgatatgctctatgcattaaa |
134 |
Q |
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|||||| ||||||||||||||||| |||||||| |||||||||||||| | |||| ||||||||||| ||||||||||||||||||||||||| |||||| |
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| T |
1786853 |
aagtactctactatttgcattctatttcaaaatggatacaatacaagtttgcattctgtttataggagtaataaatttgtgatatgctctatgtattaaa |
1786952 |
T |
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| Q |
135 |
ctttggtgtcttg |
147 |
Q |
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| T |
1786953 |
ctttggtgtcttg |
1786965 |
T |
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