View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21229_high_12 (Length: 226)
Name: NF21229_high_12
Description: NF21229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21229_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 169; Significance: 9e-91; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 22 - 206
Target Start/End: Original strand, 20140330 - 20140514
Alignment:
| Q |
22 |
atttagaagaaaaggaaagtaatacaagtttgaatttttcatatattgatatgtatcacatgctaattaaaatgttgtcaaaatctaacctaataaggag |
121 |
Q |
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| T |
20140330 |
atttagaagaaaaggaaagtaatacaagtttgaatttctcatatattgatatgtatcacatgctcattaaaatgttgtcaaaatctaacctaataaagag |
20140429 |
T |
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| Q |
122 |
tattctaaatatattgaatttctttttggaagcattaccgaaaaataattcatcttttaattacaacagccaatcataatcattc |
206 |
Q |
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| T |
20140430 |
tattctaaatatattgaatttctttttggaagcattaccgaaaaataattcatcttttaattacatcagccaatcataatcattc |
20140514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 149
Target Start/End: Complemental strand, 13397730 - 13397669
Alignment:
| Q |
88 |
ttaaaatgttgtcaaaatctaacctaataaggagtattctaaatatattgaatttctttttg |
149 |
Q |
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| T |
13397730 |
ttaaaatgttgtcaaaaaccaccccaataaagagtattctagatataatgaatttctttttg |
13397669 |
T |
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