View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21229_high_6 (Length: 382)
Name: NF21229_high_6
Description: NF21229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21229_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 17 - 312
Target Start/End: Original strand, 39788225 - 39788522
Alignment:
| Q |
17 |
acaaatcttctctaatttctcaaaaccaaatcaatttgttcaccaacataaactaatttaaaccaataaattatggattttagaggtgtgcgggaggtgg |
116 |
Q |
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| T |
39788225 |
acaattcttctctaatttctcaaaaccaaatcaatttgttcaccaacataaactaatttaaaccaataaattatggattttagaggtgtgcgggaggtgg |
39788324 |
T |
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| Q |
117 |
gtagattgagaaaagaatttcactaactgaaaagtatatttaatttttcttacgttaaatgaatttcgtaaggattttttcttatttgtttagacaaaat |
216 |
Q |
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| T |
39788325 |
gtagattgagaaaagaatttcactaactgaaaagtatatttaatttttcttacgttaaatgaatttcgtaaggattttttcttatttgtttagacaaaat |
39788424 |
T |
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| Q |
217 |
ttcgttagaaatttgataactcaatttcctcgtgcagaaaatctggaagattaataggtgtgagcaattcaattcaa--ttcaattttggtcacaaga |
312 |
Q |
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| T |
39788425 |
ttcgttagaaatttgataactcaatttcctcgtgcagaaaatctggaagattaataggtgtgagcaattcaattcaattttcaattttggtcacaaga |
39788522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 311 - 372
Target Start/End: Original strand, 39788572 - 39788633
Alignment:
| Q |
311 |
gatataattttttgtgtgggttaaaacatgtagtatatcggtttcacgaacattttcctttg |
372 |
Q |
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| T |
39788572 |
gatataattttttgtgtgggttaaaacatgtagtatatcggtttcacgaacattttcctttg |
39788633 |
T |
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