View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21229_high_8 (Length: 264)
Name: NF21229_high_8
Description: NF21229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21229_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 130; Significance: 2e-67; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 110 - 247
Target Start/End: Original strand, 45181700 - 45181837
Alignment:
| Q |
110 |
gtaaaagtaggtaaattaagtaagcatacgttgatagaggtaattactgattataatttgtaggttccatctgaaaatcttaaaaggcaaaacataattg |
209 |
Q |
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| T |
45181700 |
gtaaaagtaggtaaatcaagtaagcatacgttgatagaggtaattactgattataatttgtacgttccatctgaaaatcttaaaaggcaaaacataattg |
45181799 |
T |
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| Q |
210 |
tttaatgaaacagatcaacatggttgtgtattactatt |
247 |
Q |
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| T |
45181800 |
tttaatgaaacagatcaacatggttgtgtattactatt |
45181837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 32 - 219
Target Start/End: Original strand, 45174745 - 45174927
Alignment:
| Q |
32 |
aaaacttacttttgtgaaaaaagaaccacatagttcaggtgcacggtaccacctagttgcaatataatatagtcctttgtaaaagtaggtaaattaagta |
131 |
Q |
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| T |
45174745 |
aaaacttacttttgagaaaaaagaaccacatagttcaggtgcacggtaccacctagttgc-----aacatagtccttggtaaaagtaggtaaattaagtc |
45174839 |
T |
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| Q |
132 |
agcatac-gttgatagaggtaattactgattataatttgtaggttccatctgaaaatctt-aaaaggcaaaacataattgtttaatgaaa |
219 |
Q |
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| T |
45174840 |
agcaagcggtttagagaggtagcta--gattgcaatttgtaggttccaactgaaaatcttaaaaaggaaaaacataattgattgatgaaa |
45174927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 10 - 79
Target Start/End: Original strand, 45181633 - 45181702
Alignment:
| Q |
10 |
aagaaaatatgatgtcaaacaaaaaacttacttttgtgaaaaaagaaccacatagttcaggtgcacggta |
79 |
Q |
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| T |
45181633 |
aagaaaatatgatgtcaaacaaaaaacttacttttgtgaaaaaagaaccacatagttcaggtgcacggta |
45181702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 36 - 93
Target Start/End: Original strand, 29961966 - 29962023
Alignment:
| Q |
36 |
cttacttttgtgaaaaaagaaccacatagttcaggtgcacggtaccacctagttgcaa |
93 |
Q |
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| T |
29961966 |
cttacttttgagaaaaaagaaccacatagttcaggtgcacgataccaccgagtcgcaa |
29962023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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