View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21229_low_1 (Length: 659)
Name: NF21229_low_1
Description: NF21229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21229_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 516; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 15 - 641
Target Start/End: Original strand, 5051987 - 5052597
Alignment:
| Q |
15 |
atcacgaggagaagattgaggggacatgacatttgatatctattagttgtgtactttaaccccctcattccctttacttactgccatgttcataggccac |
114 |
Q |
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| T |
5051987 |
atcacgaggagaagattgaggggacatgacatttgatatctattagttgtgtactttaaccccctcattccctttacttactgccatgttcataggccac |
5052086 |
T |
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| Q |
115 |
tcttaaagatagtgaggttcaaagtattgacattgccaagaaggcgtttacaggaatgtgagtttggattggaatattcagtgaacattgaagacaatag |
214 |
Q |
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| T |
5052087 |
tctcaaagacagtgaggttcaatgtattgacattgccaagaaggcgtttacaggaatgtgagtttggattggaa-attcagtgaacatttaagacaatag |
5052185 |
T |
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| Q |
215 |
taccttggtttcaaatgttttatggtcatgacgtaggcatgatctcatcaaatttggatatgttttaatgttttgcattgacttaactagtcaatgttnn |
314 |
Q |
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| T |
5052186 |
taccttggtttcagatgttttatggtcatgacgtaggcatgatctcatcaaatttggatatgttttaatgctttgcattgacttaactagtcaatgttaa |
5052285 |
T |
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| Q |
315 |
nnnnnttgattataatatacaatatggatttcaaatatagtagttaatatcaaatttgcacggtgatataacagggatgcccttcacttctgtgatgtgc |
414 |
Q |
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| T |
5052286 |
aaaatttgattataatatacaatatggctttcaaatatagtagttaatatcaaatttgcacggtgctataacagggatgccctt---------------c |
5052370 |
T |
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| Q |
415 |
aatggagtaaaatttcgtgatcaagtttctccatgttcaaccatccagcaatggaggaatcactttattttgtttttggttactctattgttcttggtac |
514 |
Q |
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| T |
5052371 |
aatggagtaaaatttcgtgatcaagtttctccatgttcaaccatccagcaatggaggaatcactttattttgtttttggttactctattgttcttggtac |
5052470 |
T |
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| Q |
515 |
ctgccaggctgcctgtttcattccatggtgttacattaacctaggagagatgatttggtcactttcaggtggattgtgaaatactctactagtatttcga |
614 |
Q |
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| T |
5052471 |
ctgccaggctgcctgtttcattccatggtgttacattaacctaggagagatgatttggtcactttcaggtggattgtgaaatactctactagtatttcga |
5052570 |
T |
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| Q |
615 |
tttttaagtgtatgttcatatgtttgt |
641 |
Q |
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| T |
5052571 |
tttttaagtgtatgttcatatgtttgt |
5052597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 538 - 617
Target Start/End: Original strand, 5048966 - 5049045
Alignment:
| Q |
538 |
catggtgttacattaacctaggagagatgatttggtcactttcaggtggattgtgaaatactctactagtatttcgattt |
617 |
Q |
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| T |
5048966 |
catggttttagattaacctaggagagaggatttagacactttcaggtggattgtgaattactcttctagtattttgattt |
5049045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 356 - 446
Target Start/End: Original strand, 5048513 - 5048602
Alignment:
| Q |
356 |
agttaatatcaaatttgcacggtgatataacagggatgcccttcacttctgtgatgtgcaatggagtaaaatttcgtgatcaagtttctcc |
446 |
Q |
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| T |
5048513 |
agttaatatcaaatttgcacggtccta-aatagggatgcccttcacttttgtgatgtgcgatagagttaagttttgtgatcaagtttctcc |
5048602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 214 - 293
Target Start/End: Original strand, 5048194 - 5048273
Alignment:
| Q |
214 |
gtaccttggtttcaaatgttttatggtcatgacgtaggcatgatctcatcaaatttggatatgttttaatgttttgcatt |
293 |
Q |
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| T |
5048194 |
gtaccttagtttcaaatgtttgactgttctgacttggtcatgatctcatcaaatttggatatgttttaatgctttgcatt |
5048273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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