View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21229_low_12 (Length: 244)
Name: NF21229_low_12
Description: NF21229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21229_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 7 - 226
Target Start/End: Complemental strand, 31681940 - 31681718
Alignment:
| Q |
7 |
tcgaagaatattacatttatgtacattatggcttaaaaagaatggtggcggacagcaatttcgctttactttcgttggtggcttccttggtggaggcttc |
106 |
Q |
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| T |
31681940 |
tcgaataatattacatttatgtacattatggcttaaaaagaatggtggcggacagcaatttcactttacttttgttggtggcttccttggtggaggcttt |
31681841 |
T |
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| Q |
107 |
cccggcggcggtggt---tacgaatttcattttttattggaaaagtcttaatccttgaatttttcttagggaaagctacagccttgatttcctcaaggga |
203 |
Q |
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| T |
31681840 |
cccggcggcggtggtggttacgaatttcattttttattggaaaagtcttaatccttgaatttttcttagggaaagctatagccttgatttcctcaaggga |
31681741 |
T |
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| Q |
204 |
ccacatctataatgttgactaat |
226 |
Q |
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| T |
31681740 |
ccacatctataatgttgactaat |
31681718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 50 - 226
Target Start/End: Original strand, 40781195 - 40781377
Alignment:
| Q |
50 |
ggtggcggacagcaatttcgctttactttcgttggtggcttccttggtggaggcttccccgg------cggcggtggttacgaatttcattttttattgg |
143 |
Q |
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| T |
40781195 |
ggtggtggacagcaatttcactttacttttgatggtggcttccctggtggaggctttcccggaggcggcggcggcggttacgaatttcatttttgattgg |
40781294 |
T |
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| Q |
144 |
aaaagtcttaatccttgaatttttcttagggaaagctacagccttgatttcctcaagggaccacatctataatgttgactaat |
226 |
Q |
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| T |
40781295 |
aaaagtcttaatccttaaatttttcttagggaaagctatagccttgatttcctcaagggaccacatctataatgttgactaat |
40781377 |
T |
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