View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21229_low_13 (Length: 236)
Name: NF21229_low_13
Description: NF21229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21229_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 17 - 230
Target Start/End: Complemental strand, 38915641 - 38915427
Alignment:
| Q |
17 |
aaaaaatgtgtatttttggttttgtcttgacaaataattgattttgacttagttgattatgtaaaattaattttgagttgaataattaatttgtgtattt |
116 |
Q |
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| T |
38915641 |
aaaaaatgtgtatttttggttttgtcttgacaaataattgattttgacttagttgattatgtaaaattaattttgaattgaataattaatttgtgtattt |
38915542 |
T |
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| Q |
117 |
gaataaattttagaatcaaaagctacacataacattttaatttaggcctccagtcttaa-nnnnnnnnnnctcaaattcatccttcttactaaacattgt |
215 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||| |
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| T |
38915541 |
gaataaattttagaatcaaaaactacacataacattttaatttaggtctccggtcttaatttttttttctctcaaattcatccttcttactaaacattgt |
38915442 |
T |
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| Q |
216 |
ggaggttgatgatgt |
230 |
Q |
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| T |
38915441 |
ggaggttgatgatgt |
38915427 |
T |
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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 1500098 - 1500033
Alignment:
| Q |
25 |
tgtatttttggttttgtcttgacaaataattgattttgacttagttgattatgtaaaattaattttg |
91 |
Q |
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| T |
1500098 |
tgtatttttggttctgagttgacaaa-aattgattttgactgaattgattttgtaaaattgattttg |
1500033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 140
Target Start/End: Original strand, 8549927 - 8549976
Alignment:
| Q |
91 |
gagttgaataattaatttgtgtatttgaataaattttagaatcaaaagct |
140 |
Q |
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| T |
8549927 |
gagttgaacaataaatttgtgtataagaataaattttataatcaaaagct |
8549976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 143
Target Start/End: Original strand, 31708247 - 31708300
Alignment:
| Q |
90 |
tgagttgaataattaatttgtgtatttgaataaattttagaatcaaaagctaca |
143 |
Q |
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|||||||||| || ||||||||| || |||| |||| ||||||||||||||||| |
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| T |
31708247 |
tgagttgaattataaatttgtgtgttagaatcaattctagaatcaaaagctaca |
31708300 |
T |
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